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BiocGenerics (version 0.18.0)
S4 generic functions for Bioconductor
Description
S4 generic functions needed by many Bioconductor packages.
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Version
0.18.0
0.16.0
0.14.0
0.12.1
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Version
0.18.0
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in BiocGenerics (0.18.0)
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annotation
Accessing annotation information
append
Append elements to a vector-like object
boxplot
Box plots
IQR
The Interquartile Range
evalq
Evaluate an (unevaluated) expression
dge
Accessors and generic functions used in the context of count datasets
tapply
Apply a function over a ragged array
score
Score accessor
S3-classes-as-S4-classes
S3 classes as S4 classes
plotPCA
PCA-plot: Principal Component Analysis plot
rep
Replicate elements of a vector-like object
subset
Subsetting vector-like, matrix-like and data-frame-like objects
nrow
The number of rows/columns of an array-like object
cbind
Combine objects by rows or columns
organism_species
Organism and species accessors
paste
Concatenate strings
unique
Extract unique elements
duplicated
Determine duplicate elements
plotMA
MA-plot: plot differences versus averages for high-throughput data
do.call
Execute a function call
get
Return the value of a named object
image
Display a color image
normalize
Normalize an object
combine
Combining or merging different Bioconductor data structures
testPackage
Run RUnit package unit tests
start
Start, end, width generic getters and setters
sort
Sorting a vector-like object
table
Cross tabulation and table creation
as.vector
Coerce an object into a vector
match
Value matching
BiocGenerics-package
S4 generic functions for Bioconductor
density
Kernel density estimation
clusterApply
Apply operations using clusters
grep
Pattern Matching and Replacement
order
Ordering permutation
strand
Accessing strand information
weights
Extract model weights
sets
Set operations
eval
Evaluate an (unevaluated) expression
Extremes
Maxima and minima
xtabs
Cross tabulation
lengths
Lengths of the list elements of a list-like object
relist
Re-listing an unlist()ed object
rank
Ranks the values in a vector-like object
updateObject
Update an object to its current class definition
residuals
Extract model residuals
as.data.frame
Coerce an object into a data frame
lapply
Apply a function over a list-like or vector-like object
row+colnames
Row and column names
funprog
Common higher-order functions in functional programming languages
unsplit
Unsplit a list-like object
mad
Median Absolute Deviation
is.unsorted
Test if a vector-like object is not sorted
mapply
Apply a function to multiple list-like or vector-like arguments
unlist
Flatten list-like objects
fileName
Accessing the file name of an object
dbconn
Accessing SQLite DB information