Parse RELATION elements from KGML files
Get title for given element
KGML file parser
Class "KEGGGroup"
Expand KEGG node of paralogues
Graph density
Determines whether a list is homogenous
Translate between KEGGID and Entrez Gene ID
Split KEGG group
Subset KEGG graph by node types
Tranlate the KEGG graph from being indexed by KEGGID to another
identifer
Parses KEGGpathway to graph
Parse KGML relation subtype
Predefinitions of node or edge types
Plot KEGG graph with Rgraphviz
Colorectal cancer dataset
Get display information for relation subtypes
Get a character string as label for display
Get or set list of KEGG node or edge data
Class "KEGGPathwayInfo"
Get Rgraphviz compatitable edge names
Parse reaction from KGML files
Get subtype
Class "KEGGReaction"
Expand KEGG Pathway
Parse 'graphics' elements in KGML files
Subset KEGG graph, including subsetting node and edge attributes
Get 'value' attribute
Extract the value in a vector by name
Parse KGML files into KEGG graph
A convenient function to parse KGML and expand its containing
maps into one graph object
Query the subgraph of a given KEGG graph with Entrez GeneID (s)
Parse ENTRY elements of KGML document
Return the neighborhood set of given vertices
Randomly subset the given graph
Class 'KEGGEdge'
Class "KEGGEdgeSubType"
KEGGpathway2reactionGraph
Convert chemical reaction network of KEGG pathway into graph
Get KEGG gene link
class 'KEGGGraphics'
Get 'name' attribute
Get KEGG ID
Get type attribute
Get entry ID for single or list of KEGGNode or KEGGedge object(s)
Parse KGML file into a data frame
Merge KEGG graphs, also merging KEGGNode and KEGGEdge attributes
Class "KEGGNode"
Class "KEGGPathway"
Parse information of the pathway from KGML files
Get KEGG pathway info
Get KGML file (url) with KEGG PATHWAY ID and (optional) organism
Get KEGG reactions
A function to merge KEGG graphs
Return common significance sign (asterisk) associated with given
p value
Convert KGML file name to pathway name