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PriorCD (version 0.1.0)

Prioritizing Cancer Drugs for Interested Cancer

Description

Prioritize candidate cancer drugs for drug repositioning based on the random walk with restart algorithm in a drug-drug functional similarity network. 1) We firstly constructed a drug-drug functional similarity network by integrating pathway activity and drug activity derived from the NCI-60 cancer cell lines. 2) Secondly, we calculated drug repurposing score according to a set of approved therapeutic drugs of interested cancer based on the random walk with restart algorithm in the drug-drug functional similarity network. 3) Finally, the permutation test was used to calculate the statistical significance level for the drug repurposing score.

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Version

Install

install.packages('PriorCD')

Monthly Downloads

8

Version

0.1.0

License

GPL (>= 2)

Maintainer

Junwei Han

Last Published

February 24th, 2019

Functions in PriorCD (0.1.0)

getData

getData
envData

The variables in the environment include an example profile, a edgelist of our drug simiarity network, comprehensive drug information, restart drug set of breast cancer, candidate drugs of breast cancer, fdr of drug similarity network, correlation between drugs, mRNA and microRNA pathway activity profiles we've enriched.
getROC

getROC
getDDN

getDDN
prior

prior
PriorCD-package

Prioritizing cancer drugs for interested cancer
drsim

drsim