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acm4r (version 1.0)

Align-and-Count Method comparisons of RFLP data

Description

Fragment lengths or molecular weights from pairs of lanes are compared, and a number of matching bands are calculated using the Align-and-Count Method.

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Version

Install

install.packages('acm4r')

Monthly Downloads

5

Version

1.0

License

GPL

Maintainer

Andrea Benedetti

Last Published

December 28th, 2013

Functions in acm4r (1.0)

call_gd1

Genetic Distance 1
call_acm

Align-and-Count Method comparisons of RFLP data
acmwrapall

acmwrapall (acm warp all)
call_gd2

Genetic Distance 2
acm.file.exists

acm.file.exists (the modified file.exists function in acm)
acm.file.checkdelete

acm.file.checkdelete
call_bablbs

BABLBS (Band Added Band Lost Band Substituted)
replicates.in

Sample replicate file
experiments.in

Sample fingerprint file
clusters

Clustering
acm.file.copy

acm.file.copy (the modified file.copy function in acm)
call_erra

Error Analysis for 1D Electrophoresis Gels