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acm4r (version 1.0)
Align-and-Count Method comparisons of RFLP data
Description
Fragment lengths or molecular weights from pairs of lanes are compared, and a number of matching bands are calculated using the Align-and-Count Method.
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Version
Version
1.0
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Install
install.packages('acm4r')
Monthly Downloads
14
Version
1.0
License
GPL
Maintainer
Andrea Benedetti
Last Published
December 28th, 2013
Functions in acm4r (1.0)
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call_gd1
Genetic Distance 1
call_acm
Align-and-Count Method comparisons of RFLP data
acmwrapall
acmwrapall (acm warp all)
call_gd2
Genetic Distance 2
acm.file.exists
acm.file.exists (the modified file.exists function in acm)
acm.file.checkdelete
acm.file.checkdelete
call_bablbs
BABLBS (Band Added Band Lost Band Substituted)
replicates.in
Sample replicate file
experiments.in
Sample fingerprint file
clusters
Clustering
acm.file.copy
acm.file.copy (the modified file.copy function in acm)
call_erra
Error Analysis for 1D Electrophoresis Gels