⚠️There's a newer version (3.1) of this package.Take me there.

enRich (version 3.0)

An R Package for the Analysis of Multiple ChIP-Seq Data

Description

An R package for joint statistical modelling of ChIP-seq data, accounting for technical/biological replicates, multiple conditions and different ChIP efficiencies of the individual experiments.

Copy Link

Version

Install

install.packages('enRich')

Monthly Downloads

Version

3.0

License

GPL-2

Maintainer

Yanchun Bao

Last Published

October 24th, 2015

Functions in enRich (3.0)

p300cbp.200bp

Example Data

enRich-package

An R package for the analysis of multiple ChIP-seq data.

IPE

Estimating the ImmunoPrecipitation (IP) efficiency of a ChIP-seq experiment.

enrich.mix

Detection of enriched and differentially bound regions for fitting results of mix and mix.joint.

mix

Fitting mixture of two densities, either Poisson or Negative Binomial, to ChIP-seq data.

mix.joint

Joint fitting of mixture of Poisson or NB densities to ChIP-seq experiments.

p300cbp.1000bp

Example Data

FDR

Identification of enriched regions by controlling a given FDR level

mrf

Fitting a one-dimensional Markov random field mixture model to ChIP-seq data.

enrich.mrf

Detection of enriched and differentially bound regions for fitting results of mrf and mrf.joint.

mrf.joint

Joint fitting of a one-dimensional Markov random field model to multiple ChIP-seq datasets.