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flowQ (version 1.32.0)
Quality control for flow cytometry
Description
Provides quality control and quality assessment tools for flow cytometry data.
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Version
1.32.0
1.30.0
1.28.1
1.26.0
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Version
1.32.0
License
Artistic-2.0
Maintainer
MJiang
Last Published
January 1st, 1970
Functions in flowQ (1.32.0)
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qaProcess.timeline
Create QA process of type 'timeline'
qaProcess.ECDFPlot
Creates a QA process for comparisons of ECDF's across multiple samples
qaProcess.timeflow
Create QA process of type 'timeflow'
binaryAggregator-class
Class "binaryAggregator"
outliers-methods
~~ Methods for Function outliers in Package `.GlobalEnv' ~~
writeQAReport
Create HTML report for (lists of) qaProcess objects
qaAggregator-class
Abstraction of the possible outcomes of a QA process
qaProcess.marginevents
Create QA process of type 'marginevents'
qaProcess.BoundaryPlot
Creates a QA process for comparison of the percentage of boundary events for the specified parameters across multiple samples
qaReport
Create HTML report using one or several QA process function(s)
writeQATextReport
Create tab delimited text files for (lists of) qaProcess objects
flowQ-package
Quality control for flow cytometry
qaProcess.cellnumber
Create QA process of type 'cellnumber'
locateDuplicatedParameters
Locate Duplicated Parameters
qData
Data for demonstrating QA processes that compares dye parameters from each patient across multiple aliquots
scatter_gate
Singlets Detection
flowQB-package
Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV-instrinsic calculations.
find_peak
Peak Detection
evaluateProcess
Evaluate QA processes
factorAggregator-class
Class "factorAggregator"
qaProcess.DensityPlot
Creates a QA process for comparisons of density plots across multiple samples
qaProcess-class
Abstraction of the results of a QA process
BEADflowQBCalculation
QB Calculation for Beads
qaProcess.KLDistPlot
Creates a QA process for comparisons of KL Distances across multiple samples
qaProcess.2DStatsPlot
Creates a QA process for 2D summary statistic comparisons across multiple samples
LEDflowQBCalculation
QB Calculation for LEDs
numericAggregator-class
Class "numericAggregator"
outlier-class
Virtual Class "outlier"
validProcess
Validate a QAProcess object
qaProcessSummary
Class "qaProcessSummary"
preProcessFlowList
Preprocess a list of flowSets to add empty flowFrames for patients in which certain aliquots are missing
outlierResult-class
Class "outlierResult"
aggregatorList-class
Class "aggregatorList"
qaGraphList-class
Class "qaGraphList"
qaGraph-class
Class "qaGraph"
normailzeSets
Locate Duplicated Parameters
qaProcessFrame-class
Class "qaProcessFrame"
discreteAggregator-class
Class "discreteAggregator"
rangeAggregator-class
Class "rangeAggregator"
stringAggregator-class
Class "stringAggregator"
txtFormatQAObject
Formats results contained in QA process objects into a data frame with appropriate row and column names