Phylogenetic Clustering (Phyloclustering)
Description
Phylogenetic clustering (phyloclustering) is an
evolutionary Continuous Time Markov Chain model-based approach
to identify population structure from molecular data without
assuming linkage equilibrium. It provides a convenient
implementation of phyloclustering for DNA and SNP data, capable
of clustering individuals into subpopulations and identifying
molecular sequences representative of those subpopulations. It
is designed in C for performance, interfaced with R for
visualization, and incorporates other popular open source
software, ms, seq-gen and Hap-Clustering for simulating data
and additional analyses. See the phyclust website for more
information, documentations and examples.