spatstat v1.52-1

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Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests

Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported. Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.

Functions in spatstat

Name Description
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
DiggleGratton Diggle-Gratton model
CDF Cumulative Distribution Function From Kernel Density Estimate
Concom The Connected Component Process Model
Extract.fasp Extract Subset of Function Array
Extract.fv Extract or Replace Subset of Function Values
AreaInter The Area Interaction Point Process Model
BadGey Hybrid Geyer Point Process Model
Emark Diagnostics for random marking
Extract.anylist Extract or Replace Subset of a List of Things
Extract.leverage.ppm Extract Subset of Leverage Object
Extract.linim Extract Subset of Pixel Image on Linear Network
Extract.quad Subset of Quadrature Scheme
Extract.solist Extract or Replace Subset of a List of Spatial Objects
Extract.linnet Extract Subset of Linear Network
Extract.listof Extract or Replace Subset of a List of Things
Extract.ppx Extract Subset of Multidimensional Point Pattern
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
Gest Nearest Neighbour Distance Function G
Extract.influence.ppm Extract Subset of Influence Object
Extract.layered Extract or Replace Subset of a Layered Object
Extract.owin Extract Subset of Window
Extract.ppp Extract or Replace Subset of Point Pattern
Finhom Inhomogeneous Empty Space Function
FmultiInhom Inhomogeneous Marked F-Function
HierHard The Hierarchical Hard Core Point Process Model
HierStrauss The Hierarchical Strauss Point Process Model
K3est K-function of a Three-Dimensional Point Pattern
Kcom Model Compensator of K Function
Kdot Multitype K Function (i-to-any)
Kdot.inhom Inhomogeneous Multitype K Dot Function
Extract.lpp Extract Subset of Point Pattern on Linear Network
Extract.msr Extract Subset of Signed or Vector Measure
Extract.tess Extract or Replace Subset of Tessellation
F3est Empty Space Function of a Three-Dimensional Point Pattern
Gcom Model Compensator of Nearest Neighbour Function
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
Extract.hyperframe Extract or Replace Subset of Hyperframe
Extract.im Extract Subset of Image
Extract.splitppp Extract or Replace Sub-Patterns
[.ssf Subset of spatially sampled function
Fest Estimate the Empty Space Function or its Hazard Rate
Fiksel The Fiksel Interaction
GmultiInhom Inhomogeneous Marked G-Function
Kmodel.dppm K-function or Pair Correlation Function of a Determinantal Point Process Model
Kmodel.kppm K Function or Pair Correlation Function of Cluster Model or Cox model
Lcross Multitype L-function (cross-type)
Lcross.inhom Inhomogeneous Cross Type L Function
Ginhom Inhomogeneous Nearest Neighbour Function
Gmulti Marked Nearest Neighbour Distance Function
Jdot Multitype J Function (i-to-any)
Jest Estimate the J-function
Kinhom Inhomogeneous K-function
Gres Residual G Function
HierStraussHard The Hierarchical Strauss Hard Core Point Process Model
Hybrid Hybrid Interaction Point Process Model
Kcross Multitype K Function (Cross-type)
Geyer Geyer's Saturation Point Process Model
Gfox Foxall's Distance Functions
Jinhom Inhomogeneous J-function
Jmulti Marked J Function
Kmark Mark-Weighted K Function
Ksector Sector K-function
LambertW Lambert's W Function
Linhom L-function
Kcross.inhom Inhomogeneous Cross K Function
Kres Residual K Function
Kscaled Locally Scaled K-function
Math.imlist S3 Group Generic methods for List of Images
Math.im S3 Group Generic methods for images
Ops.msr Arithmetic Operations on Measures
Ord Generic Ord Interaction model
Saturated Saturated Pairwise Interaction model
Math.linim S3 Group Generic Methods for Images on a Linear Network
OrdThresh Ord's Interaction model
PPversion Transform a Function into its P-P or Q-Q Version
MinkowskiSum Minkowski Sum of Windows
MultiHard The Multitype Hard Core Point Process Model
Smooth.ppp Spatial smoothing of observations at irregular points
Smooth.ssf Smooth a Spatially Sampled Function
Kest K-function
Kest.fft K-function using FFT
Kmulti.inhom Inhomogeneous Marked K-Function
Kovesi Colour Sequences with Uniform Perceptual Contrast
LennardJones The Lennard-Jones Potential
Smooth Spatial smoothing of data
Window Extract or Change the Window of a Spatial Object
WindowOnly Extract Window of Spatial Object
addvar Added Variable Plot for Point Process Model
Extract.psp Extract Subset of Line Segment Pattern
Frame Extract or Change the Containing Rectangle of a Spatial Object
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
Hardcore The Hard Core Point Process Model
Hest Spherical Contact Distribution Function
Smoothfun.ppp Smooth Interpolation of Marks as a Spatial Function
Softcore The Soft Core Point Process Model
affine.tess Apply Geometrical Transformation To Tessellation
allstats Calculate four standard summary functions of a point pattern.
Lest L-function
Pairwise Generic Pairwise Interaction model
Smooth.fv Apply Smoothing to Function Values
Replace.im Reset Values in Subset of Image
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
add.texture Fill Plot With Texture
affine.lpp Apply Geometrical Transformations to Point Pattern on a Linear Network
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
Smooth.msr Smooth a Signed or Vector-Valued Measure
Strauss The Strauss Point Process Model
StraussHard The Strauss / Hard Core Point Process Model
affine.im Apply Affine Transformation To Pixel Image
anova.ppm ANOVA for Fitted Point Process Models
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
as.box3 Convert Data to Three-Dimensional Box
as.boxx Convert Data to Multi-Dimensional Box
as.data.frame.tess Convert Tessellation to Data Frame
affine Apply Affine Transformation
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
amacrine Hughes' Amacrine Cell Data
areaGain Difference of Disc Areas
Iest Estimate the I-function
Jcross Multitype J Function (i-to-j)
Kmeasure Reduced Second Moment Measure
Kmodel K Function or Pair Correlation Function of a Point Process Model
Kmodel.ppm K Function or Pair Correlation Function of Gibbs Point Process model
Kmulti Marked K-Function
Ldot Multitype L-function (i-to-any)
Ldot.inhom Inhomogeneous Multitype L Dot Function
affine.linnet Apply Geometrical Transformations to a Linear Network
anemones Beadlet Anemones Data
angles.psp Orientation Angles of Line Segments
applynbd Apply Function to Every Neighbourhood in a Point Pattern
area.owin Area of a Window
areaLoss Difference of Disc Areas
as.function.owin Convert Window to Indicator Function
as.function.tess Convert a Tessellation to a Function
as.fv Convert Data To Class fv
as.function.fv Convert Function Value Table to Function
as.linnet.linim Extract Linear Network from Data on a Linear Network
as.linnet.psp Convert Line Segment Pattern to Linear Network
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
as.matrix.im Convert Pixel Image to Matrix or Array
austates Australian States and Mainland Territories
bc.ppm Bias Correction for Fitted Model
berman.test Berman's Tests for Point Process Model
betacells Beta Ganglion Cells in Cat Retina
boxx Multi-Dimensional Box
bramblecanes Hutchings' Bramble Canes data
affine.owin Apply Affine Transformation To Window
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
anova.mppm ANOVA for Fitted Point Process Models for Replicated Patterns
as.data.frame.envelope Coerce Envelope to Data Frame
as.data.frame.im Convert Pixel Image to Data Frame
as.data.frame.owin Convert Window to Data Frame
as.interact Extract Interaction Structure
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
as.function.im Convert Pixel Image to Function of Coordinates
as.function.leverage.ppm Convert Leverage Object to Function of Coordinates
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
as.im Convert to Pixel Image
as.lpp Convert Data to a Point Pattern on a Linear Network
as.mask Pixel Image Approximation of a Window
as.rectangle Window Frame
as.solist Convert List of Two-Dimensional Spatial Objects
as.hyperframe Convert Data to Hyperframe
as.matrix.owin Convert Pixel Image to Matrix
as.owin Convert Data To Class owin
bdist.pixels Distance to Boundary of Window
bdist.points Distance to Boundary of Window
blur Apply Gaussian Blur to a Pixel Image
border Border Region of a Window
boundingcircle Smallest Enclosing Circle
box3 Three-Dimensional Box
bw.ppl Likelihood Cross Validation Bandwidth Selection for Kernel Density
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
beachcolours Create Colour Scheme for a Range of Numbers
beginner Print Introduction For Beginners
branchlabelfun Tree Branch Membership Labelling Function
bw.frac Bandwidth Selection Based on Window Geometry
bw.pcf Cross Validated Bandwidth Selection for Pair Correlation Function
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
cbind.hyperframe Combine Hyperframes by Rows or by Columns
bronzefilter Bronze gradient filter data
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
clip.infline Intersect Infinite Straight Lines with a Window
clmfires Castilla-La Mancha Forest Fires
clusterfield Field of clusters
clusterfit Fit Cluster or Cox Point Process Model via Minimum Contrast
colourtools Convert and Compare Colours in Different Formats
commonGrid Determine A Common Spatial Domain And Pixel Resolution
contour.im Contour plot of pixel image
contour.imlist Array of Contour Plots
convexhull Convex Hull
as.layered Convert Data To Layered Object
as.ppp Convert Data To Class ppp
as.psp Convert Data To Class psp
cdf.test Spatial Distribution Test for Point Pattern or Point Process Model
cdf.test.mppm Spatial Distribution Test for Multiple Point Process Model
clickdist Interactively Measure Distance
convexhull.xy Convex Hull of Points
crossdist.default Pairwise distances between two different sets of points
crossdist.lpp Pairwise distances between two point patterns on a linear network
dclf.progress Progress Plot of Test of Spatial Pattern
dclf.sigtrace Significance Trace of Cressie-Loosmore-Ford or Maximum Absolute Deviation Test
clickbox Interactively Define a Rectangle
delaunayNetwork Linear Network of Delaunay Triangulation or Dirichlet Tessellation
deletebranch Delete or Extract a Branch of a Tree
dfbetas.ppm Parameter influence measure
dg.envelope Global Envelopes for Dao-Genton Test
dilation Morphological Dilation
dim.detpointprocfamily Dimension of Determinantal Point Process Model
distfun Distance Map as a Function
distfun.lpp Distance Map on Linear Network
MultiStrauss The Multitype Strauss Point Process Model
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
Penttinen Penttinen Interaction
Poisson Poisson Point Process Model
Triplets The Triplet Point Process Model
Tstat Third order summary statistic
affine.ppp Apply Affine Transformation To Point Pattern
affine.psp Apply Affine Transformation To Line Segment Pattern
ants Harkness-Isham ants' nests data
anyNA.im Check Whether Image Contains NA Values
anylist List of Objects
append.psp Combine Two Line Segment Patterns
clusterkernel Extract Cluster Offspring Kernel
clusterradius Compute or Extract Effective Range of Cluster Kernel
compatible.fasp Test Whether Function Arrays Are Compatible
compatible.fv Test Whether Function Objects Are Compatible
as.tess Convert Data To Tessellation
auc Area Under ROC Curve
bind.fv Combine Function Value Tables
bits.test Balanced Independent Two-Stage Monte Carlo Test
chicago Chicago Crime Data
chop.tess Subdivide a Window or Tessellation using a Set of Lines
clickjoin Interactively join vertices on a plot
clicklpp Interactively Add Points on a Linear Network
compatible.im Test Whether Pixel Images Are Compatible
compileK Generic Calculation of K Function and Pair Correlation Function
covering Cover Region with Discs
crossdist Pairwise distances
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
closepairs Close Pairs of Points
closepairs.pp3 Close Pairs of Points in 3 Dimensions
coef.ppm Coefficients of Fitted Point Process Model
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
bounding.box.xy Convex Hull of Points
boundingbox Bounding Box of a Window, Image, or Point Pattern
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
by.im Apply Function to Image Broken Down by Factor
cells Biological Cells Point Pattern
dppBessel Bessel Type Determinantal Point Process Model
dppCauchy Generalized Cauchy Determinantal Point Process Model
dppkernel Extract Kernel from Determinantal Point Process Model Object
dppm Fit Determinantal Point Process Model
connected Connected components
connected.linnet Connected Components of a Linear Network
copyExampleFiles Copy Data Files for Example
corners Corners of a rectangle
crossing.linnet Crossing Points between Linear Network and Other Lines
as.data.frame.ppp Coerce Point Pattern to a Data Frame
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
as.linfun Convert Data to a Function on a Linear Network
as.linim Convert to Pixel Image on Linear Network
as.polygonal Convert a Window to a Polygonal Window
as.ppm Extract Fitted Point Process Model
bdist.tiles Distance to Boundary of Window
centroid.owin Centroid of a window
clarkevans Clark and Evans Aggregation Index
clarkevans.test Clark and Evans Test
closetriples Close Triples of Points
bdspots Breakdown Spots in Microelectronic Materials
begins Check Start of Character String
bei Tropical rain forest trees
bugfixes List Recent Bug Fixes
edges Extract Boundary Edges of a Window.
edges2triangles List Triangles in a Graph
emend Force Model to be Valid
emend.ppm Force Point Process Model to be Valid
closing Morphological Closing
collapse.fv Collapse Several Function Tables into One
colourmap Colour Lookup Tables
complement.owin Take Complement of a Window
concatxy Concatenate x,y Coordinate Vectors
exactMPLEstrauss Exact Maximum Pseudolikelihood Estimate for Stationary Strauss Process
expand.owin Apply Expansion Rule
fitted.ppm Fitted Conditional Intensity for Point Process Model
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
flu Influenza Virus Proteins
foo Foo is Not a Real Name
hamster Aherne's hamster tumour data
convexify Weil's Convexifying Operation
convolve.im Convolution of Pixel Images
cut.im Convert Pixel Image from Numeric to Factor
cut.lpp Classify Points in a Point Pattern on a Network
crossdist.ppp Pairwise distances between two different point patterns
default.expand Default Expansion Rule for Simulation of Model
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
crossing.psp Crossing Points of Two Line Segment Patterns
cut.ppp Classify Points in a Point Pattern
data.ppm Extract Original Data from a Fitted Point Process Model
dendrite Dendritic Spines Data
dg.progress Progress Plot of Dao-Genton Test of Spatial Pattern
dg.sigtrace Significance Trace of Dao-Genton Test
harmonic Basis for Harmonic Functions
hextess Hexagonal Grid or Tessellation
hierpair.family Hierarchical Pairwise Interaction Process Family
demopat Artificial Data Point Pattern
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
chorley Chorley-Ribble Cancer Data
hybrid.family Hybrid Interaction Family
hyperframe Hyper Data Frame
influence.ppm Influence Measure for Spatial Point Process Model
inforder.family Infinite Order Interaction Family
intensity Intensity of a Dataset or a Model
intensity.dppm Intensity of Determinantal Point Process Model
intersect.tess Intersection of Two Tessellations
invoke.symbolmap Plot Data Using Graphics Symbol Map
is.empty Test Whether An Object Is Empty
is.hybrid Test Whether Object is a Hybrid
is.stationary Recognise Stationary and Poisson Point Process Models
delaunay Delaunay Triangulation of Point Pattern
delaunayDistance Distance on Delaunay Triangulation
density.psp Kernel Smoothing of Line Segment Pattern
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
deriv.fv Calculate Derivative of Function Values
detpointprocfamilyfun Construct a New Determinantal Point Process Model Family Function
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
dimhat Estimate Dimension of Central Subspace
dirichlet Dirichlet Tessellation of Point Pattern
discs Union of Discs
distcdf Distribution Function of Interpoint Distance
circdensity Density Estimation for Circular Data
clickpoly Interactively Define a Polygon
clickppp Interactively Add Points
diameter.linnet Diameter and Bounding Radius of a Linear Network
distmap Distance Map
distmap.owin Distance Map of Window
dppGauss Gaussian Determinantal Point Process Model
density.lpp Kernel Estimate of Intensity on a Linear Network
density.ppp Kernel Smoothed Intensity of Point Pattern
diameter Diameter of an Object
dppMatern Whittle-Matern Determinantal Point Process Model
dppapproxpcf Approximate Pair Correlation Function of Determinantal Point Process Model
dppeigen Internal function calculating eig and index
distmap.ppp Distance Map of Point Pattern
distmap.psp Distance Map of Line Segment Pattern
dppspecdenrange Range of Spectral Density of a Determinantal Point Process Model
dummify Convert Data to Numeric Values by Constructing Dummy Variables
edge.Ripley Ripley's Isotropic Edge Correction
edge.Trans Translation Edge Correction
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
ellipse Elliptical Window.
eval.fv Evaluate Expression Involving Functions
eval.im Evaluate Expression Involving Pixel Images
clusterset Allard-Fraley Estimator of Cluster Feature
coef.mppm Coefficients of Point Process Model Fitted to Multiple Point Patterns
compareFit Residual Diagnostics for Multiple Fitted Models
compatible Test Whether Objects Are Compatible
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
endpoints.psp Endpoints of Line Segment Pattern
diameter.box3 Geometrical Calculations for Three-Dimensional Box
diameter.owin Diameter of a Window
dilated.areas Areas of Morphological Dilations
discpartarea Area of Part of Disc
connected.lpp Connected Components of a Point Pattern on a Linear Network
connected.ppp Connected Components of a Point Pattern
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
copper Berman-Huntington points and lines data
measureVariation Positive and Negative Parts, and Variation, of a Measure
is.subset.owin Determine Whether One Window is Contained In Another
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
kaplan.meier Kaplan-Meier Estimator using Histogram Data
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
crossdist.psp Pairwise distances between two different line segment patterns
dclf.test Diggle-Cressie-Loosmore-Ford and Maximum Absolute Deviation Tests
fitted.lppm Fitted Intensity for Point Process on Linear Network
fitted.mppm Fitted Conditional Intensity for Multiple Point Process Model
fv.object Function Value Table
fvnames Abbreviations for Groups of Columns in Function Value Table
linearK Linear K Function
kernel.factor Scale factor for density kernel
nndist Nearest neighbour distances
envelope Simulation Envelopes of Summary Function
eroded.areas Areas of Morphological Erosions
erosion Morphological Erosion by a Disc
finpines Pine saplings in Finland.
fitin.ppm Extract the Interaction from a Fitted Point Process Model
fourierbasis Fourier Basis Functions
fryplot Fry Plot of Point Pattern
ganglia Beta Ganglion Cells in Cat Retina, Old Version
gauss.hermite Gauss-Hermite Quadrature Approximation to Expectation for Normal Distribution
headtail First or Last Part of a Spatial Pattern
heather Diggle's Heather Data
default.dummy Generate a Default Pattern of Dummy Points
demohyper Demonstration Example of Hyperframe of Spatial Data
dg.test Dao-Genton Adjusted Goodness-Of-Fit Test
hyytiala Scots pines and other trees at Hyytiala
identify.ppp Identify Points in a Point Pattern
im.object Class of Images
imcov Spatial Covariance of a Pixel Image
deltametric Delta Metric
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
dirichletAreas Compute Areas of Tiles in Dirichlet Tessellation
dirichletVertices Vertices and Edges of Dirichlet Tessellation
dirichletWeights Compute Quadrature Weights Based on Dirichlet Tessellation
disc Circular Window
intensity.lpp Empirical Intensity of Point Pattern on Linear Network
intensity.ppm Intensity of Fitted Point Process Model
iplot Point and Click Interface for Displaying Spatial Data
ippm Fit Point Process Model Involving Irregular Trend Parameters
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
markconnect Mark Connection Function
linearKcross Multitype K Function (Cross-type) for Linear Point Pattern
gordon People in Gordon Square
gorillas Gorilla Nesting Sites
harmonise.owin Make Windows Compatible
has.close Check Whether Points Have Close Neighbours
discretise Safely Convert Point Pattern Window to Binary Mask
dmixpois Mixed Poisson Distribution
domain Extract the Domain of any Spatial Object
methods.pp3 Methods for three-dimensional point patterns
linequad Quadrature Scheme on a Linear Network
linfun Function on a Linear Network
lintess Tessellation on a Linear Network
model.frame.ppm Extract the Variables in a Point Process Model
is.im Test Whether An Object Is A Pixel Image
is.lpp Test Whether An Object Is A Point Pattern on a Linear Network
is.multitype.ppm Test Whether A Point Process Model is Multitype
is.multitype.ppp Test Whether A Point Pattern is Multitype
identify.psp Identify Segments in a Line Segment Pattern
idw Inverse-distance weighted smoothing of observations at irregular points
im Create a Pixel Image Object
im.apply Apply Function Pixelwise to List of Images
insertVertices Insert New Vertices in a Linear Network
dppparbounds Parameter Bound for a Determinantal Point Process Model
dppspecden Extract Spectral Density from Determinantal Point Process Model Object
edges2vees List Dihedral Triples in a Graph
edit.hyperframe Invoke Text Editor on Hyperframe
lengths.psp Lengths of Line Segments
istat Point and Click Interface for Exploratory Analysis of Point Pattern
marks Marks of a Point Pattern
inside.boxx Test Whether Points Are Inside A Multidimensional Box
intensity.ppp Empirical Intensity of Point Pattern
intensity.ppx Intensity of a Multidimensional Space-Time Point Pattern
is.convex Test Whether a Window is Convex
japanesepines Japanese Pines Point Pattern
linearmarkequal Mark Connection Function for Multitype Point Pattern on Linear Network
letterR Window in Shape of Letter R
linearpcf Linear Pair Correlation Function
linearmarkconnect Mark Connection Function for Multitype Point Pattern on Linear Network
is.dppm Recognise Fitted Determinantal Point Process Models
is.marked.ppp Test Whether A Point Pattern is Marked
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
is.multitype Test whether Object is Multitype
lixellate Subdivide Segments of a Network
maxnndist Compute Minimum or Maximum Nearest-Neighbour Distance
markcorr Mark Correlation Function
matrixpower Power of a Matrix
parres Partial Residuals for Point Process Model
model.matrix.ppm Extract Design Matrix from Point Process Model
mergeLevels Merge Levels of a Factor
methods.objsurf Methods for Objective Function Surfaces
divide.linnet Divide Linear Network at Cut Points
dkernel Kernel distributions and random generation
dppPowerExp Power Exponential Spectral Determinantal Point Process Model
dppapproxkernel Approximate Determinantal Point Process Kernel
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
envelopeArray Array of Simulation Envelopes of Summary Function
erosionAny Morphological Erosion of Windows
eval.fasp Evaluate Expression Involving Function Arrays
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
logLik.kppm Log Likelihood and AIC for Fitted Cox or Cluster Point Process Model
linearpcfcross Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
methods.ppx Methods for Multidimensional Space-Time Point Patterns
model.images Compute Images of Constructed Covariates
model.depends Identify Covariates Involved in each Model Term
nsegments Number of Line Segments in a Line Segment Pattern
nndensity.ppp Estimate Intensity of Point Pattern Using Nearest Neighbour Distances
plot.textstring Plot a Text String
nvertices Count Number of Vertices
quantile.density Quantiles of a Density Estimate
nnorient Nearest Neighbour Orientation Distribution
nnwhich Nearest neighbour
owin.object Class owin
owin Create a Window
plot.anylist Plot a List of Things
pairs.linim Scatterplot Matrix for Pixel Images on a Linear Network
pairsat.family Saturated Pairwise Interaction Point Process Family
pcf Pair Correlation Function
pcfinhom Inhomogeneous Pair Correlation Function
pcfmulti Marked pair correlation function
edit.ppp Invoke Text Editor on Spatial Data
eem Exponential Energy Marks
envelope.envelope Recompute Envelopes
markcrosscorr Mark Cross-Correlation Function
logLik.mppm Log Likelihood and AIC for Multiple Point Process Model
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
fixef.mppm Extract Fixed Effects from Point Process Model
flipxy Exchange X and Y Coordinates
formula.fv Extract or Change the Plot Formula for a Function Value Table
envelope.lpp Envelope for Point Patterns on Linear Network
plot.bermantest Plot Result of Berman Test
plot.hyperframe Plot Entries in a Hyperframe
plot.im Plot a Pixel Image
print.im Print Brief Details of an Image
eval.linim Evaluate Expression Involving Pixel Images on Linear Network
ewcdf Weighted Empirical Cumulative Distribution Function
fardist Farthest Distance to Boundary of Window
fasp.object Function Arrays for Spatial Patterns
funxy Spatial Function Class
formula.ppm Model Formulae for Gibbs Point Process Models
grow.boxx Add margins to box in any dimension
grow.rectangle Add margins to rectangle
harmonise.im Make Pixel Images Compatible
harmonise.msr Make Measures Compatible
hist.funxy Histogram of Values of a Spatial Function
hist.im Histogram of Pixel Values in an Image
increment.fv Increments of a Function
infline Infinite Straight Lines
inside.owin Test Whether Points Are Inside A Window
plot.mppm plot a Fitted Multiple Point Process Model
plot.texturemap Plot a Texture Map
ppm.object Class of Fitted Point Process Models
plot.msr Plot a Signed or Vector-Valued Measure
plot.plotppm Plot a plotppm Object Created by plot.ppm
multiplicity.ppp Count Multiplicity of Duplicate Points
methods.box3 Methods for Three-Dimensional Box
nobjects Count Number of Geometrical Objects in a Spatial Dataset
methods.rho2hat Methods for Intensity Functions of Two Spatial Covariates
plot.pp3 Plot a Three-Dimensional Point Pattern
pool.envelope Pool Data from Several Envelopes
print.owin Print Brief Details of a Spatial Window
integral.im Integral of a Pixel Image
interp.im Interpolate a Pixel Image
intersect.owin Intersection, Union or Set Subtraction of Windows
is.marked Test Whether Marks Are Present
is.marked.ppm Test Whether A Point Process Model is Marked
is.ppp Test Whether An Object Is A Point Pattern
methods.kppm Methods for Cluster Point Process Models
is.rectangle Determine Type of Window
lansing Lansing Woods Point Pattern
pool.anylist Pool Data from a List of Objects
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
print.psp Print Brief Details of a Line Segment Pattern Dataset
ppm.ppp Fit Point Process Model to Point Pattern Data
print.quad Print a Quadrature Scheme
rSSI Simulate Simple Sequential Inhibition
quantile.ewcdf Quantiles of Weighted Empirical Cumulative Distribution Function
quantess Quantile Tessellation
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
quantile.im Sample Quantiles of Pixel Image
rotate.infline Rotate or Shift Infinite Lines
rStraussHard Perfect Simulation of the Strauss-Hardcore Process
rescale.ppp Convert Point Pattern to Another Unit of Length
rThomas Simulate Thomas Process
rStrauss Perfect Simulation of the Strauss Process
rescale.owin Convert Window to Another Unit of Length
reduced.sample Reduced Sample Estimator using Histogram Data
methods.boxx Methods for Multi-Dimensional Box
methods.units Methods for Units
methods.ssf Methods for Spatially Sampled Functions
reach.dppm Range of Interaction for a Determinantal Point Process Model
spatstat-internal Internal spatstat functions
rex Richardson Extrapolation
rmpoint Generate N Random Multitype Points
latest.news Print News About Latest Version of Package
kppm Fit Cluster or Cox Point Process Model
linearpcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
fv Create a Function Value Table
gridcentres Rectangular grid of points
gridweights Compute Quadrature Weights Based on Grid Counts
residualspaper Data and Code From JRSS Discussion Paper on Residuals
rhohat Smoothing Estimate of Intensity as Function of a Covariate
ripras Estimate window from points alone
pairdist.lpp Pairwise shortest-path distances between points on a linear network
laslett Laslett's Transform
levelset Level Set of a Pixel Image
linearKdot.inhom Inhomogeneous multitype K Function (Dot-type) for Linear Point Pattern
leverage.ppm Leverage Measure for Spatial Point Process Model
rshift Random Shift
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
rotate.owin Rotate a Window
rpoislpp Poisson Point Process on a Linear Network
markvario Mark Variogram
layered Create List of Plotting Layers
lpp Create Point Pattern on Linear Network
lineardirichlet Dirichlet Tessellation on a Linear Network
logLik.slrm Loglikelihood of Spatial Logistic Regression
lineardisc Compute Disc of Given Radius in Linear Network
midpoints.psp Midpoints of Line Segment Pattern
logLik.ppm Log Likelihood and AIC for Point Process Model
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
harmonise Make Objects Compatible
harmonise.fv Make Function Tables Compatible
linearpcfdot Multitype Pair Correlation Function (Dot-type) for Linear Point Pattern
linearKinhom Inhomogeneous Linear K Function
linearpcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-type) for Linear Point Pattern
methods.funxy Methods for Spatial Functions
humberside Humberside Data on Childhood Leukaemia and Lymphoma
improve.kppm Improve Intensity Estimate of Fitted Cluster Point Process Model
incircle Find Largest Circle Inside Window
integral.linim Integral on a Linear Network
integral.msr Integral of a Measure
hopskel Hopkins-Skellam Test
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
localK Neighbourhood density function
lurking Lurking variable plot
localKinhom Inhomogeneous Neighbourhood Density Function
nnwhich.ppx Nearest Neighbours in Any Dimensions
nnmark Mark of Nearest Neighbour
mucosa Cells in Gastric Mucosa
nncross Nearest Neighbours Between Two Patterns
methods.dppm Methods for Determinantal Point Process Models
matchingdist Distance for a Point Pattern Matching
methods.zclustermodel Methods for Cluster Models
lppm Fit Point Process Model to Point Pattern on Linear Network
nnfun Nearest Neighbour Index Map as a Function
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
nnmap K-th Nearest Point Map
perspPoints Draw Points or Lines on a Surface Viewed in Perspective
opening Morphological Opening
parameters Extract Model Parameters in Understandable Form
paracou Kimboto trees at Paracou, French Guiana
pixellate.owin Convert Window to Pixel Image
intensity.quadratcount Intensity Estimates Using Quadrat Counts
interp.colourmap Interpolate smoothly between specified colours
is.connected Determine Whether an Object is Connected
is.connected.ppp Determine Whether a Point Pattern is Connected
is.owin Test Whether An Object Is A Window
pairdist.pp3 Pairwise distances in Three Dimensions
ord.family Ord Interaction Process Family
ponderosa Ponderosa Pine Tree Point Pattern
pairdist.ppp Pairwise distances
methods.fii Methods for Fitted Interactions
nearestsegment Find Line Segment Nearest to Each Point
objsurf Objective Function Surface
methods.lpp Methods for Point Patterns on a Linear Network
methods.lppm Methods for Fitted Point Process Models on a Linear Network
nearest.raster.point Find Pixel Nearest to a Given Point
overlap.owin Compute Area of Overlap
model.matrix.slrm Extract Design Matrix from Spatial Logistic Regression Model
moribund Outdated Functions
nnfun.lpp Nearest Neighbour Map on Linear Network
pairorient Point Pair Orientation Distribution
is.ppm Test Whether An Object Is A Fitted Point Process Model
kernel.moment Moment of Smoothing Kernel
linearKcross.inhom Inhomogeneous multitype K Function (Cross-type) for Linear Point Pattern
kernel.squint Integral of Squared Kernel
linim Create Pixel Image on Linear Network
layerplotargs Extract or Replace the Plot Arguments of a Layered Object
layout.boxes Generate a Row or Column Arrangement of Rectangles.
marks.psp Marks of a Line Segment Pattern
linearKdot Multitype K Function (Dot-type) for Linear Point Pattern
methods.rhohat Methods for Intensity Functions of Spatial Covariate
localpcf Local pair correlation function
linnet Create a Linear Network
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
nztrees New Zealand Trees Point Pattern
pool.fasp Pool Data from Several Function Arrays
pixelcentres Extract Pixel Centres as Point Pattern
plot.symbolmap Plot a Graphics Symbol Map
pcf.fv Pair Correlation Function obtained from K Function
pairs.im Scatterplot Matrix for Pixel Images
rshift.ppp Randomly Shift a Point Pattern
sidelengths.owin Side Lengths of Enclosing Rectangle of a Window
summary.owin Summary of a Spatial Window
rpoispp Generate Poisson Point Pattern
plot.cdftest Plot a Spatial Distribution Test
pcf.fasp Pair Correlation Function obtained from array of K functions
pool.fv Pool Several Functions
plot.imlist Plot a List of Images
pixellate.ppp Convert Point Pattern to Pixel Image
persp.im Perspective Plot of Pixel Image
plot.lintess Plot a Tessellation on a Linear Network
runifpoint3 Generate N Uniform Random Points in Three Dimensions
runifpointOnLines Generate N Uniform Random Points On Line Segments
sessionLibs Print Names and Version Numbers of Libraries Loaded
simba Simulated data from a two-group experiment with replication within each group.
plot.slrm Plot a Fitted Spatial Logistic Regression
plot.influence.ppm Plot Influence Measure
plot.solist Plot a List of Spatial Objects
plot.listof Plot a List of Things
mean.im Mean and Median of Pixel Values in an Image
mppm Fit Point Process Model to Several Point Patterns
logLik.dppm Log Likelihood and AIC for Fitted Determinantal Point Process Model
selfcut.psp Cut Line Segments Where They Intersect
simulate.dppm Simulation of Determinantal Point Process Model
spatstat-deprecated Deprecated spatstat functions
spokes Spokes pattern of dummy points
simulate.kppm Simulate a Fitted Cluster Point Process Model
pixellate Convert Spatial Object to Pixel Image
plot.layered Layered Plot
pppmatching Create a Point Matching
plot.colourmap Plot a Colour Map
subfits Extract List of Individual Point Process Models
symbolmap Graphics Symbol Map
sporophores Sporophores Data
studpermu.test Studentised Permutation Test
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
lut Lookup Tables
mincontrast Method of Minimum Contrast
methods.linim Methods for Images on a Linear Network
treeprune Prune Tree to Given Level
plot.quadratcount Plot Quadrat Counts
ppp Create a Point Pattern
quadrat.test.mppm Chi-Squared Test for Multiple Point Process Model Based on Quadrat Counts
methods.linnet Methods for Linear Networks
nbfires Point Patterns of New Brunswick Forest Fires
murchison Murchison gold deposits
nndist.ppx Nearest Neighbour Distances in Any Dimensions
miplot Morisita Index Plot
plot.quadrattest Display the result of a quadrat counting test.
prune.rppm Prune a Recursively Partitioned Point Process Model
quadrat.test Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
npoints Number of Points in a Point Pattern
nndist.psp Nearest neighbour distances between line segments
profilepl Fit Models by Profile Maximum Pseudolikelihood or AIC
nncross.lpp Nearest Neighbours on a Linear Network
nncross.pp3 Nearest Neighbours Between Two Patterns in 3D
plot.lpp Plot Point Pattern on Linear Network
plot.leverage.ppm Plot Leverage Function
plot.lppm Plot a Fitted Point Process Model on a Linear Network
plot.ppp plot a Spatial Point Pattern
plot.ppm plot a Fitted Point Process Model
lohboot Bootstrap Confidence Bands for Summary Function
methods.slrm Methods for Spatial Logistic Regression Models
longleaf Longleaf Pines Point Pattern
marks.tess Marks of a Tessellation
methods.layered Methods for Layered Objects
msr Signed or Vector-Valued Measure
mean.linim Mean, Median, Quantiles of Pixel Values on a Linear Network
methods.linfun Methods for Functions on Linear Network
summary.ppm Summarizing a Fitted Point Process Model
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
will.expand Test Expansion Rule
swedishpines Swedish Pines Point Pattern
npfun Dummy Function Returns Number of Points
pcf.ppp Pair Correlation Function of Point Pattern
psib Sibling Probability of Cluster Point Process
pairdist.default Pairwise distances
pairdist.psp Pairwise distances between line segments
nnwhich.lpp Identify Nearest Neighbours on a Linear Network
nndist.pp3 Nearest neighbour distances in three dimensions
nnclean Nearest Neighbour Clutter Removal
nnwhich.pp3 Nearest neighbours in three dimensions
periodify Make Periodic Copies of a Spatial Pattern
nestsplit Nested Split
pcfcross Multitype pair correlation function (cross-type)
plot.tess Plot a tessellation
project2segment Move Point To Nearest Line
pyramidal Pyramidal Neurons in Cingulate Cortex
predict.mppm Prediction for Fitted Multiple Point Process Model
pppmatching.object Class of Point Matchings
rotate.im Rotate a Pixel Image
predict.ppm Prediction from a Fitted Point Process Model
project2set Find Nearest Point in a Region
unique.ppp Extract Unique Points from a Spatial Point Pattern
unitname Name for Unit of Length
triangulate.owin Decompose Window into Triangles
rLGCP Simulate Log-Gaussian Cox Process
quadscheme Generate a Quadrature Scheme from a Point Pattern
rMatClust Simulate Matern Cluster Process
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
pool Pool Data
ppmInfluence Leverage and Influence Measures for Spatial Point Process Model
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
predict.rppm Make Predictions From a Recursively Partitioned Point Process Model
nndist.lpp Nearest neighbour distances on a linear network
pairdist Pairwise distances
plot.linim Plot Pixel Image on Linear Network
valid Check Whether Point Process Model is Valid
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
urkiola Urkiola Woods Point Pattern
whist Weighted Histogram
with.msr Evaluate Expression Involving Components of a Measure
with.ssf Evaluate Expression in a Spatially Sampled Function
pseudoR2 Calculate Pseudo-R-Squared for Point Process Model
psp.object Class of Line Segment Patterns
rose Rose Diagram
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
rescue.rectangle Convert Window Back To Rectangle
quadscheme.logi Generate a Logistic Regression Quadrature Scheme from a Point Pattern
range.fv Range of Function Values
rNeymanScott Simulate Neyman-Scott Process
sharpen Data Sharpening of Point Pattern
rcellnumber Generate Random Numbers of Points for Cell Process
rMaternI Simulate Matern Model I
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
rMaternII Simulate Matern Model II
rescale Convert dataset to another unit of length
panel.contour Panel Plots using Colour Image or Contour Lines
padimage Pad the Border of a Pixel Image
pairwise.family Pairwise Interaction Process Family
perimeter Perimeter Length of Window
plot.dppm Plot a fitted determinantal point process
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
predict.lppm Predict Point Process Model on Linear Network
rags Alternating Gibbs Sampler for Multitype Point Processes
pairdist.ppx Pairwise Distances in Any Dimensions
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
pcfdot Multitype pair correlation function (i-to-any)
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
rcell Simulate Baddeley-Silverman Cell Process
residuals.mppm Residuals for Point Process Model Fitted to Multiple Point Patterns
plot.envelope Plot a Simulation Envelope
plot.psp plot a Spatial Line Segment Pattern
plot.fasp Plot a Function Array
plot.fv Plot Function Values
pixellate.psp Convert Line Segment Pattern to Pixel Image
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
plot.scan.test Plot Result of Scan Test
pixelquad Quadrature Scheme Based on Pixel Grid
plot.laslett Plot Laslett Transform
simdat Simulated Point Pattern
residuals.ppm Residuals for Fitted Point Process Model
rescale.im Convert Pixel Image to Another Unit of Length
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
rjitter Random Perturbation of a Point Pattern
roc Receiver Operating Characteristic
rknn Theoretical Distribution of Nearest Neighbour Distance
rounding Detect Numerical Rounding
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
rshift.psp Randomly Shift a Line Segment Pattern
rpoint Generate N Random Points
rshift.splitppp Randomly Shift a List of Point Patterns
rPenttinen Perfect Simulation of the Penttinen Process
reflect Reflect In Origin
rescale.psp Convert Line Segment Pattern to Another Unit of Length
plot.yardstick Plot a Yardstick or Scale Bar
plot.linnet Plot a linear network
pppdist Distance Between Two Point Patterns
pointsOnLines Place Points Evenly Along Specified Lines
runifpointx Generate N Uniform Random Points in Any Dimensions
spatialcdf Spatial Cumulative Distribution Function
scalardilate Apply Scalar Dilation
ranef.mppm Extract Random Effects from Point Process Model
relrisk.ppm Parametric Estimate of Spatially-Varying Relative Risk
regularpolygon Create A Regular Polygon
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
relrisk Estimate of Spatially-Varying Relative Risk
rotate Rotate
rmh.ppm Simulate from a Fitted Point Process Model
plot.kppm Plot a fitted cluster point process
pool.quadrattest Pool Several Quadrat Tests
plot.owin Plot a Spatial Window
plot.onearrow Plot an Arrow
plot.ssf Plot a Spatially Sampled Function
plot.rppm Plot a Recursively Partitioned Point Process Model
plot.splitppp Plot a List of Point Patterns
points.lpp Draw Points on Existing Plot
plot.quad Plot a Spatial Quadrature Scheme
polynom Polynomial in One or Two Variables
ppp.object Class of Point Patterns
predict.kppm Prediction from a Fitted Cluster Point Process Model
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
scanpp Read Point Pattern From Data File
print.ppm Print a Fitted Point Process Model
simplenet Simple Example of Linear Network
simulate.lppm Simulate a Fitted Point Process Model on a Linear Network
shift Apply Vector Translation
spatdim Spatial Dimension of a Dataset
simulate.mppm Simulate a Point Process Model Fitted to Several Point Patterns
suffstat Sufficient Statistic of Point Process Model
stienen Stienen Diagram
stratrand Stratified random point pattern
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
pp3 Three Dimensional Point Pattern
pool.rat Pool Data from Several Ratio Objects
ppm Fit Point Process Model to Data
quadratresample Resample a Point Pattern by Resampling Quadrats
ppx Multidimensional Space-Time Point Pattern
rMosaicField Mosaic Random Field
predict.dppm Prediction from a Fitted Determinantal Point Process Model
residuals.kppm Residuals for Fitted Cox or Cluster Point Process Model
progressreport Print Progress Reports
thomas.estK Fit the Thomas Point Process by Minimum Contrast
summary.solist Summary of a List of Spatial Objects
unstack.msr Separate a Vector Measure into its Scalar Components
rPoissonCluster Simulate Poisson Cluster Process
print.ppp Print Brief Details of a Point Pattern Dataset
quasirandom Quasirandom Patterns
quadrat.test.splitppp Dispersion Test of CSR for Split Point Pattern Based on Quadrat Counts
quad.object Class of Quadrature Schemes
subspaceDistance Distance Between Linear Spaces
rQuasi Generate Quasirandom Point Pattern in Given Window
ragsAreaInter Alternating Gibbs Sampler for Area-Interaction Process
quadratcount Quadrat counting for a point pattern
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
ragsMultiHard Alternating Gibbs Sampler for Multitype Hard Core Process
rho2hat Smoothed Relative Density of Pairs of Covariate Values
runifdisc Generate N Uniform Random Points in a Disc
rdpp Simulation of a Determinantal Point Process
summary.quad Summarizing a Quadrature Scheme
timed Record the Computation Time
update.interact Update an Interpoint Interaction
transect.im Pixel Values Along a Transect
psp Create a Line Segment Pattern
rHardcore Perfect Simulation of the Hardcore Process
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
rthin Random Thinning
quadrats Divide Region into Quadrats
tiles Extract List of Tiles in a Tessellation
sdr Sufficient Dimension Reduction
rmhexpand Specify Simulation Window or Expansion Rule
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
rstrat Simulate Stratified Random Point Pattern
rGaussPoisson Simulate Gauss-Poisson Process
rat Ratio object
rMosaicSet Mosaic Random Set
redwood California Redwoods Point Pattern (Ripley's Subset)
rpoisline Generate Poisson Random Line Process
rpoislinetess Poisson Line Tessellation
solapply Apply a Function Over a List and Obtain a List of Objects
runiflpp Uniform Random Points on a Linear Network
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
unstack.ppp Separate Multiple Columns of Marks
where.max Find Location of Maximum in a Pixel Image
update.detpointprocfamily Set Parameter Values in a Determinantal Point Process Model
relevel.im Reorder Levels of a Factor-Valued Image or Pattern
reach Interaction Distance of a Point Process
reload.or.compute Compute Unless Previously Saved
rgbim Create Colour-Valued Pixel Image
rnoise Random Pixel Noise
vcov.mppm Calculate Variance-Covariance Matrix for Fitted Multiple Point Process Model
zapsmall.im Rounding of Pixel Values
yardstick Text, Arrow or Scale Bar in a Diagram
whichhalfplane Test Which Side of Infinite Line a Point Falls On
raster.x Cartesian Coordinates for a Pixel Raster
redwoodfull California Redwoods Point Pattern (Entire Dataset)
round.ppp Apply Numerical Rounding to Spatial Coordinates
residuals.dppm Residuals for Fitted Determinantal Point Process Model
rsyst Simulate systematic random point pattern
runifpoint Generate N Uniform Random Points
subset.hyperframe Subset of Hyperframe Satisfying A Condition
shift.im Apply Vector Translation To Pixel Image
relrisk.ppp Nonparametric Estimate of Spatially-Varying Relative Risk
requireversion Require a Specific Version of a Package
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
rtemper Simulated Annealing or Simulated Tempering for Gibbs Point Processes
slrm Spatial Logistic Regression
sdrPredict Compute Predictors from Sufficient Dimension Reduction
superimpose.lpp Superimpose Several Point Patterns on Linear Network
shift.owin Apply Vector Translation To Window
spatstat-package The Spatstat Package
spruces Spruces Point Pattern
spatstat.options Internal Options in Spatstat Package
square Square Window
subset.ppp Subset of Point Pattern Satisfying A Condition
vesicles Vesicles Data
valid.ppm Check Whether Point Process Model is Valid
rlpp Random Points on a Linear Network
shift.ppp Apply Vector Translation To Point Pattern
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
rotmean Rotational Average of a Pixel Image
superimpose Superimpose Several Geometric Patterns
tile.areas Compute Areas of Tiles in a Tessellation
tilenames Names of Tiles in a Tessellation
tileindex Determine Which Tile Contains Each Given Point
tweak.colourmap Change Colour Values in a Colour Map
union.quad Union of Data and Dummy Points
vertices Vertices of a Window
valid.detpointprocfamily Check Validity of a Determinantal Point Process Model
weighted.median Weighted Median, Quantiles or Variance
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
summary.listof Summary of a List of Things
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
scaletointerval Rescale Data to Lie Between Specified Limits
waterstriders Waterstriders data. Three independent replications of a point pattern formed by insects.
scan.test Spatial Scan Test
setcov Set Covariance of a Window
shapley Galaxies in the Shapley Supercluster
texturemap Texture Map
spiders Spider Webs on Mortar Lines of a Brick Wall
simulate.ppm Simulate a Fitted Gibbs Point Process Model
tess Create a Tessellation
rlinegrid Generate grid of parallel lines with random displacement
rpoisppx Generate Poisson Point Pattern in Any Dimensions
rlabel Random Re-Labelling of Point Pattern
selfcrossing.psp Crossing Points in a Line Segment Pattern
rmpoispp Generate Multitype Poisson Point Pattern
run.simplepanel Run Point-and-Click Interface
shift.psp Apply Vector Translation To Line Segment Pattern
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
unnormdensity Weighted kernel smoother
split.ppp Divide Point Pattern into Sub-patterns
rotate.ppp Rotate a Point Pattern
rotate.psp Rotate a Line Segment Pattern
rppm Recursively Partitioned Point Process Model
simplify.owin Approximate a Polygon by a Simpler Polygon
ssf Spatially Sampled Function
segregation.test Test of Spatial Segregation of Types
scanLRTS Likelihood Ratio Test Statistic for Scan Test
split.hyperframe Divide Hyperframe Into Subsets and Reassemble
split.ppx Divide Multidimensional Point Pattern into Sub-patterns
tiles.empty Check For Empty Tiles in a Tessellation
summary.kppm Summarizing a Fitted Cox or Cluster Point Process Model
summary.ppp Summary of a Point Pattern Dataset
textureplot Plot Image or Tessellation Using Texture Fill
split.msr Divide a Measure into Parts
solist List of Two-Dimensional Spatial Objects
timeTaken Extract the Total Computation Time
summary.psp Summary of a Line Segment Pattern Dataset
volume Volume of an Object
unmark Remove Marks
update.rmhcontrol Update Control Parameters of Metropolis-Hastings Algorithm
varcount Predicted Variance of the Number of Points
varblock Estimate Variance of Summary Statistic by Subdivision
waka Trees in Waka national park
update.symbolmap Update a Graphics Symbol Map.
zclustermodel Cluster Point Process Model
simplepanel Simple Point-and-Click Interface Panels
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
sumouter Compute Quadratic Forms
split.im Divide Image Into Sub-images
summary.anylist Summary of a List of Things
summary.im Summarizing a Pixel Image
summary.splitppp Summary of a Split Point Pattern
stieltjes Compute Integral of Function Against Cumulative Distribution
transmat Convert Pixel Array Between Different Conventions
update.ppm Update a Fitted Point Process Model
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
thinNetwork Remove Vertices or Segments from a Linear Network
trim.rectangle Cut margins from rectangle
treebranchlabels Label Vertices of a Tree by Branch Membership
triplet.family Triplet Interaction Family
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
update.kppm Update a Fitted Cluster Point Process Model
vcov.slrm Variance-Covariance Matrix for a Fitted Spatial Logistic Regression
with.fv Evaluate an Expression in a Function Table
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Vignettes of spatstat

Name
datasets.Rnw
getstart.Rnw
hexagon.eps
hexagon.pdf
irregpoly.eps
irregpoly.pdf
replicated.Rnw
shapefiles.Rnw
updates.Rnw
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Details

Nickname Apophenia
Date 2017-08-16
Remotes spatstat/spatstat.utils
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
NeedsCompilation yes
ByteCompile true
BugReports https://github.com/spatstat/spatstat/issues
Packaged 2017-08-16 06:41:56 UTC; adrian
Repository CRAN
Date/Publication 2017-08-16 09:01:38 UTC

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