SeqGSEA-package

SeqGSEA


SeqGSEA is an R package for gene set enrichment analysis of RNA-Seq data with the ability to integrate 
differential expression and differential splice in functional analysis. 


The package generally provides methods for gene set
enrichment analysis of high-throughput RNA-Seq data by
integrating differential expression and splicing. It uses
negative binomial distribution to model read count data, which
accounts for sequencing biases and biological variation. Based
on permutation tests, statistical significance can also be
achieved regarding each gene's differential expression and
splicing, respectively.

Xi Wang

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating
differential expression and splicing

SeqGSEA-package function

SeqGSEA is an R package for gene set enrichment analysis of RNA-Seq data with the ability to integrate 
differential expression and differential splice in functional analysis.

SeqGSEA-package: SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data

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