igraph v1.2.5
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Network Analysis and Visualization
Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Functions in igraph
| Name | Description | |
| E | Edges of a graph | |
| V | Vertices of a graph | |
| igraph-package | The igraph package | |
| as_adj_list | Adjacency lists | |
| add_edges | Add edges to a graph | |
| adjacent_vertices | Adjacent vertices of multiple vertices in a graph | |
| all_simple_paths | List all simple paths from one source | |
| as_adjacency_matrix | Convert a graph to an adjacency matrix | |
| add_vertices | Add vertices to a graph | |
| add_layout_ | Add layout to graph | |
| as_ids | Convert a vertex or edge sequence to an ordinary vector | |
| are_adjacent | Are two vertices adjacent? | |
| alpha_centrality | Find Bonacich alpha centrality scores of network positions | |
| authority_score | Kleinberg's authority centrality scores. | |
| as.igraph | Conversion to igraph | |
| arpack_defaults | ARPACK eigenvector calculation | |
| as.directed | Convert between directed and undirected graphs | |
| as_incidence_matrix | Incidence matrix of a bipartite graph | |
| assortativity | Assortativity coefficient | |
| as_edgelist | Convert a graph to an edge list | |
| articulation_points | Articulation points of a graph | |
| as_graphnel | Convert igraph graphs to graphNEL objects from the graph package | |
| centr_degree | Centralize a graph according to the degrees of vertices | |
| bipartite_mapping | Decide whether a graph is bipartite | |
| centr_degree_tmax | Theoretical maximum for degree centralization | |
| bipartite_projection | Project a bipartite graph | |
| automorphisms | Number of automorphisms | |
| as_long_data_frame | Convert a graph to a long data frame | |
| estimate_betweenness | Vertex and edge betweenness centrality | |
| bfs | Breadth-first search | |
| biconnected_components | Biconnected components | |
| cluster_label_prop | Finding communities based on propagating labels | |
| centr_clo | Centralize a graph according to the closeness of vertices | |
| as_membership | Declare a numeric vector as a membership vector | |
| component_wise | Component-wise layout | |
| c.igraph.vs | Concatenate vertex sequences | |
| c.igraph.es | Concatenate edge sequences | |
| component_distribution | Connected components of a graph | |
| cluster_leading_eigen | Community structure detecting based on the leading eigenvector of the community matrix | |
| complementer | Complementer of a graph | |
| delete_vertex_attr | Delete a vertex attribute | |
| delete_vertices | Delete vertices from a graph | |
| compose | Compose two graphs as binary relations | |
| centr_betw | Centralize a graph according to the betweenness of vertices | |
| centr_betw_tmax | Theoretical maximum for betweenness centralization | |
| centralize | Centralization of a graph | |
| centr_clo_tmax | Theoretical maximum for closeness centralization | |
| categorical_pal | Palette for categories | |
| cliques | The functions find cliques, ie. complete subgraphs in a graph | |
| canonical_permutation | Canonical permutation of a graph | |
| membership | Functions to deal with the result of network community detection | |
| edge_attr<- | Set one or more edge attributes | |
| dfs | Depth-first search | |
| edge_attr | Query edge attributes of a graph | |
| diameter | Diameter of a graph | |
| closeness | Closeness centrality of vertices | |
| edge_density | Graph density | |
| compare | Compares community structures using various metrics | |
| constraint | Burt's constraint | |
| ego_size | Neighborhood of graph vertices | |
| cluster_edge_betweenness | Community structure detection based on edge betweenness | |
| contract | Contract several vertices into a single one | |
| convex_hull | Convex hull of a set of vertices | |
| delete_edges | Delete edges from a graph | |
| coreness | K-core decomposition of graphs | |
| girth | Girth of a graph | |
| cluster_spinglass | Finding communities in graphs based on statistical meachanics | |
| cluster_fast_greedy | Community structure via greedy optimization of modularity | |
| gorder | Order (number of vertices) of a graph | |
| centr_eigen | Centralize a graph according to the eigenvector centrality of vertices | |
| cluster_louvain | Finding community structure by multi-level optimization of modularity | |
| delete_graph_attr | Delete a graph attribute | |
| count_isomorphisms | Count the number of isomorphic mappings between two graphs | |
| centr_eigen_tmax | Theoretical maximum for betweenness centralization | |
| cluster_walktrap | Community strucure via short random walks | |
| cluster_infomap | Infomap community finding | |
| graph_from_graphnel | Convert graphNEL objects from the graph package to igraph | |
| distance_table | Shortest (directed or undirected) paths between vertices | |
| hrg_tree | Create an igraph graph from a hierarchical random graph model | |
| hub_score | Kleinberg's hub centrality scores. | |
| count_motifs | Graph motifs | |
| cluster_optimal | Optimal community structure | |
| graph_from_incidence_matrix | Create graphs from an incidence matrix | |
| count_subgraph_isomorphisms | Count the isomorphic mappings between a graph and the subgraphs of another graph | |
| igraph-es-indexing | Indexing edge sequences | |
| count_triangles | Find triangles in graphs | |
| difference | Difference of two sets | |
| degree | Degree and degree distribution of the vertices | |
| difference.igraph | Difference of graphs | |
| delete_edge_attr | Delete an edge attribute | |
| consensus_tree | Create a consensus tree from several hierarchical random graph models | |
| diverging_pal | Diverging palette | |
| dyad_census | Dyad census of a graph | |
| console | The igraph console | |
| eccentricity | Eccentricity of the vertices in a graph | |
| ends | Incident vertices of some graph edges | |
| graph_ | Convert object to a graph | |
| graph_attr<- | Set all or some graph attributes | |
| cocitation | Cocitation coupling | |
| cohesive_blocks | Calculate Cohesive Blocks | |
| embed_laplacian_matrix | Spectral Embedding of the Laplacian of a Graph | |
| edge | Helper function for adding and deleting edges | |
| each_edge | Rewires the endpoints of the edges of a graph to a random vertex | |
| fit_power_law | Fitting a power-law distribution function to discrete data | |
| curve_multiple | Optimal edge curvature when plotting graphs | |
| decompose | Decompose a graph into components | |
| graph_from_atlas | Create a graph from the Graph Atlas | |
| groups | Groups of a vertex partitioning | |
| graph_from_edgelist | Create a graph from an edge list matrix | |
| gsize | The size of the graph (number of edges) | |
| as_data_frame | Creating igraph graphs from data frames or vice-versa | |
| get.edge.ids | Find the edge ids based on the incident vertices of the edges | |
| igraph-es-indexing2 | Select edges and show their metadata | |
| difference.igraph.es | Difference of edge sequences | |
| dim_select | Dimensionality selection for singular values using profile likelihood. | |
| graph_from_graphdb | Load a graph from the graph database for testing graph isomorphism. | |
| igraph_test | Run package tests | |
| igraph_version | Query igraph's version string | |
| graph_version | Igraph data structure versions | |
| graphlet_basis | Graphlet decomposition of a graph | |
| igraph_options | Parameters for the igraph package | |
| indent_print | Indent a printout | |
| difference.igraph.vs | Difference of vertex sequences | |
| intersection | Intersection of two or more sets | |
| is_igraph | Is this object an igraph graph? | |
| igraph_demo | Run igraph demos, step by step | |
| is_min_separator | Minumal vertex separators | |
| layout.fruchterman.reingold.grid | Grid Fruchterman-Reingold layout, this was removed from igraph | |
| head_of | Head of the edge(s) in a graph | |
| layout.spring | Spring layout, this was removed from igraph | |
| disjoint_union | Disjoint union of graphs | |
| edge_attr_names | List names of edge attributes | |
| isomorphic | Decide if two graphs are isomorphic | |
| is_printer_callback | Is this a printer callback? | |
| layout_nicely | Choose an appropriate graph layout algorithm automatically | |
| head_print | Print the only the head of an R object | |
| igraph-dollar | Getting and setting graph attributes, shortcut | |
| make_full_bipartite_graph | Create a full bipartite graph | |
| edge_connectivity | Edge connectivity. | |
| layout_with_mds | Graph layout by multidimensional scaling | |
| isomorphism_class | Isomorphism class of a graph | |
| eigen_centrality | Find Eigenvector Centrality Scores of Network Positions | |
| is_named | Named graphs | |
| layout_with_lgl | Large Graph Layout | |
| layout_on_grid | Simple grid layout | |
| diversity | Graph diversity | |
| intersection.igraph.es | Intersection of edge sequences | |
| igraph-es-attributes | Query or set attributes of the edges in an edge sequence | |
| erdos.renyi.game | Generate random graphs according to the Erdos-Renyi model | |
| make_full_citation_graph | Create a complete (full) citation graph | |
| fit_hrg | Fit a hierarchical random graph model | |
| intersection.igraph | Intersection of graphs | |
| dominator_tree | Dominator tree | |
| graph_from_isomorphism_class | Create a graph from an isomorphism class | |
| make_lattice | Create a lattice graph | |
| layout_on_sphere | Graph layout with vertices on the surface of a sphere | |
| graph_from_adj_list | Create graphs from adjacency lists | |
| embed_adjacency_matrix | Spectral Embedding of Adjacency Matrices | |
| graph_attr | Graph attributes of a graph | |
| graph_id | Get the id of a graph | |
| graph_attr_names | List names of graph attributes | |
| graph_from_literal | Creating (small) graphs via a simple interface | |
| graph_from_adjacency_matrix | Create graphs from adjacency matrices | |
| is_directed | Check whether a graph is directed | |
| layout_randomly | Randomly place vertices on a plane or in 3d space | |
| neighbors | Neighboring (adjacent) vertices in a graph | |
| hrg-methods | Hierarchical random graphs | |
| mst | Minimum spanning tree | |
| make_kautz_graph | Kautz graphs | |
| graph_from_lcf | Creating a graph from LCF notation | |
| igraph-minus | Delete vertices or edges from a graph | |
| hrg | Create a hierarchical random graph from an igraph graph | |
| printer_callback | Create a printer callback function | |
| layout_with_fr | The Fruchterman-Reingold layout algorithm | |
| is_graphical | Is a degree sequence graphical? | |
| laplacian_matrix | Graph Laplacian | |
| make_chordal_ring | Create an extended chordal ring graph | |
| igraph-vs-attributes | Query or set attributes of the vertices in a vertex sequence | |
| r_pal | The default R palette | |
| identical_graphs | Decide if two graphs are identical | |
| incident | Incident edges of a vertex in a graph | |
| plot.igraph | Plotting of graphs | |
| layout_with_gem | The GEM layout algorithm | |
| make_line_graph | Line graph of a graph | |
| plot.sir | Plotting the results on multiple SIR model runs | |
| layout.reingold.tilford | Deprecated layout functions | |
| incident_edges | Incident edges of multiple vertices in a graph | |
| make_clusters | Creates a communities object. | |
| rev.igraph.vs | Reverse the order in a vertex sequence | |
| rewire | Rewiring edges of a graph | |
| igraph-attribute-combination | How igraph functions handle attributes when the graph changes | |
| is_separator | Vertex separators | |
| print.igraph.es | Print an edge sequence to the screen | |
| path | Helper function to add or delete edges along a path | |
| min_cut | Minimum cut in a graph | |
| make_ring | Create a ring graph | |
| is_weighted | Weighted graphs | |
| merge_coords | Merging graph layouts | |
| sample_dot_product | Generate random graphs according to the random dot product graph model | |
| print.igraph.vs | Show a vertex sequence on the screen | |
| permute | Permute the vertices of a graph | |
| knn | Average nearest neighbor degree | |
| radius | Radius of a graph | |
| random_walk | Random walk on a graph | |
| layout_as_tree | The Reingold-Tilford graph layout algorithm | |
| keeping_degseq | Graph rewiring while preserving the degree distribution | |
| igraph-vs-indexing2 | Select vertices and show their metadata | |
| igraph-vs-indexing | Indexing vertex sequences | |
| intersection.igraph.vs | Intersection of vertex sequences | |
| layout_with_graphopt | The graphopt layout algorithm | |
| make_ | Make a new graph | |
| layout_in_circle | Graph layout with vertices on a circle. | |
| is_chordal | Chordality of a graph | |
| sample_correlated_gnp | Generate a new random graph from a given graph by randomly adding/removing edges | |
| sample_motifs | Graph motifs | |
| isomorphisms | Calculate all isomorphic mappings between the vertices of two graphs | |
| sample_last_cit | Random citation graphs | |
| is_degseq | Check if a degree sequence is valid for a multi-graph | |
| layout_with_kk | The Kamada-Kawai layout algorithm | |
| is_dag | Directed acyclic graphs | |
| max_flow | Maximum flow in a graph | |
| ivs | Independent vertex sets | |
| sample_fitness | Random graphs from vertex fitness scores | |
| scg_semi_proj | Semi-Projectors | |
| max_cardinality | Maximum cardinality search | |
| is_bipartite | Create a bipartite graph | |
| layout.svd | SVD layout, this was removed from igraph | |
| sequential_pal | Sequential palette | |
| layout_ | Graph layouts | |
| layout_as_star | Generate coordinates to place the vertices of a graph in a star-shape | |
| sample_k_regular | Create a random regular graph | |
| sample_seq | Sampling a random integer sequence | |
| without_attr | Construtor modifier to remove all attributes from a graph | |
| layout_with_sugiyama | The Sugiyama graph layout generator | |
| sample_smallworld | The Watts-Strogatz small-world model | |
| local_scan | Compute local scan statistics on graphs | |
| sample_sphere_surface | Sample vectors uniformly from the surface of a sphere | |
| sample_islands | A graph with subgraphs that are each a random graph. | |
| min_separators | Minimum size vertex separators | |
| sample_correlated_gnp_pair | Sample a pair of correlated G(n,p) random graphs | |
| sample_sphere_volume | Sample vectors uniformly from the volume of a sphere | |
| make_empty_graph | A graph with no edges | |
| subgraph_isomorphic | Decide if a graph is subgraph isomorphic to another one | |
| layout_as_bipartite | Simple two-row layout for bipartite graphs | |
| simplify | Simple graphs | |
| set_edge_attr | Set edge attributes | |
| layout_with_dh | The Davidson-Harel layout algorithm | |
| subgraph_isomorphisms | All isomorphic mappings between a graph and subgraphs of another graph | |
| time_bins.sir | SIR model on graphs | |
| min_st_separators | Minimum size vertex separators | |
| layout_with_drl | The DrL graph layout generator | |
| set_graph_attr | Set a graph attribute | |
| make_full_graph | Create a full graph | |
| split_join_distance | Split-join distance of two community structures | |
| spectrum | Eigenvalues and eigenvectors of the adjacency matrix of a graph | |
| %>% | Magrittr's pipes | |
| match_vertices | Match Graphs given a seeding of vertex correspondences | |
| union.igraph.vs | Union of vertex sequences | |
| make_de_bruijn_graph | De Bruijn graphs | |
| triad_census | Triad census, subgraphs with three vertices | |
| vertex | Helper function for adding and deleting vertices | |
| unique.igraph.es | Remove duplicate edges from an edge sequence | |
| transitivity | Transitivity of a graph | |
| unique.igraph.vs | Remove duplicate vertices from a vertex sequence | |
| with_igraph_opt | Run code with a temporary igraph options setting | |
| print.igraphHRG | Print a hierarchical random graph model to the screen | |
| upgrade_graph | Igraph data structure versions | |
| subgraph | Subgraph of a graph | |
| is_matching | Graph matching | |
| make_graph | Create an igraph graph from a list of edges, or a notable graph | |
| make_star | Create a star graph, a tree with n vertices and n - 1 leaves | |
| subgraph_centrality | Find subgraph centrality scores of network positions | |
| make_tree | Create tree graphs | |
| with_vertex_ | Constructor modifier to add vertex attributes | |
| without_loops | Constructor modifier to drop loop edges | |
| Drawing graphs | Drawing graphs | |
| print.igraphHRGConsensus | Print a hierarchical random graph consensus tree to the screen | |
| print.nexusDatasetInfo | Query and download from the Nexus network repository | |
| Pie charts as vertices | Using pie charts as vertices in graph plots | |
| normalize | Normalize layout | |
| motifs | Graph motifs | |
| sample_forestfire | Forest Fire Network Model | |
| page_rank | The Page Rank algorithm | |
| read_graph | Reading foreign file formats | |
| +.igraph | Add vertices, edges or another graph to a graph | |
| reciprocity | Reciprocity of graphs | |
| plot_dendrogram | Community structure dendrogram plots | |
| norm_coords | Normalize coordinates for plotting graphs | |
| sample_fitness_pl | Scale-free random graphs, from vertex fitness scores | |
| rep.igraph | Replicate a graph multiple times | |
| modularity.igraph | Modularity of a community structure of a graph | |
| predict_edges | Predict edges based on a hierarchical random graph model | |
| sample_gnm | Generate random graphs according to the G(n,m) Erdos-Renyi model | |
| power_centrality | Find Bonacich Power Centrality Scores of Network Positions | |
| rev.igraph.es | Reverse the order in an edge sequence | |
| sample_gnp | Generate random graphs according to the G(n,p) Erdos-Renyi model | |
| plot_dendrogram.igraphHRG | HRG dendrogram plot | |
| print.igraph | Print graphs to the terminal | |
| sample_dirichlet | Sample from a Dirichlet distribution | |
| sample_grg | Geometric random graphs | |
| running_mean | Running mean of a time series | |
| rglplot | 3D plotting of graphs with OpenGL | |
| sample_traits_callaway | Graph generation based on different vertex types | |
| sample_degseq | Generate random graphs with a given degree sequence | |
| sample_ | Sample from a random graph model | |
| scan_stat | Scan statistics on a time series of graphs | |
| scg_eps | Error of the spectral coarse graining (SCG) approximation | |
| sample_growing | Growing random graph generation | |
| scg_group | SCG Problem Solver | |
| simplified | Constructor modifier to drop multiple and loop edges | |
| strength | Strength or weighted vertex degree | |
| similarity | Similarity measures of two vertices | |
| sample_bipartite | Bipartite random graphs | |
| [.igraph | Query and manipulate a graph as it were an adjacency matrix | |
| sample_pa_age | Generate an evolving random graph with preferential attachment and aging | |
| sample_hrg | Sample from a hierarchical random graph model | |
| set_vertex_attr | Set vertex attributes | |
| union.igraph.es | Union of edge sequences | |
| shapes | Various vertex shapes when plotting igraph graphs | |
| sample_pa | Generate scale-free graphs according to the Barabasi-Albert model | |
| sample_hierarchical_sbm | Sample the hierarchical stochastic block model | |
| which_multiple | Find the multiple or loop edges in a graph | |
| union.igraph | Union of graphs | |
| sample_pref | Trait-based random generation | |
| st_min_cuts | List all minimum \((s,t)\)-cuts of a graph | |
| without_multiples | Constructor modifier to drop multiple edges | |
| stochastic_matrix | Stochastic matrix of a graph | |
| [[.igraph | Query and manipulate a graph as it were an adjacency list | |
| which_mutual | Find mutual edges in a directed graph | |
| write_graph | Writing the graph to a file in some format | |
| sample_sbm | Sample stochastic block model | |
| scg-method | Spectral Coarse Graining | |
| subcomponent | In- or out- component of a vertex | |
| union | Union of two or more sets | |
| scg | All-in-one Function for the SCG of Matrices and Graphs | |
| vertex_attr | Query vertex attributes of a graph | |
| vertex_attr<- | Set one or more vertex attributes | |
| with_edge_ | Constructor modifier to add edge attributes | |
| srand | Deprecated function, used to set random seed of the C library's RNG | |
| unfold_tree | Convert a general graph into a forest | |
| with_graph_ | Constructor modifier to add graph attributes | |
| st_cuts | List all (s,t)-cuts of a graph | |
| tkplot | Interactive plotting of graphs | |
| tail_of | Tails of the edge(s) in a graph | |
| tkigraph | Experimental basic igraph GUI | |
| topo_sort | Topological sorting of vertices in a graph | |
| vertex_attr_names | List names of vertex attributes | |
| vertex_connectivity | Vertex connectivity. | |
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Details
| License | GPL (>= 2) |
| URL | http://igraph.org |
| SystemRequirements | gmp (optional), libxml2 (optional), glpk (optional) |
| BugReports | https://github.com/igraph/igraph/issues |
| Encoding | UTF-8 |
| RoxygenNote | 7.1.0 |
| Collate | 'adjacency.R' 'auto.R' 'assortativity.R' 'attributes.R' 'basic.R' 'bipartite.R' 'centrality.R' 'centralization.R' 'cliques.R' 'cocitation.R' 'cohesive.blocks.R' 'community.R' 'components.R' 'console.R' 'conversion.R' 'data_frame.R' 'decomposition.R' 'degseq.R' 'demo.R' 'embedding.R' 'epi.R' 'fit.R' 'flow.R' 'foreign.R' 'games.R' 'glet.R' 'hrg.R' 'igraph-package.R' 'incidence.R' 'indexing.R' 'interface.R' 'iterators.R' 'layout.R' 'layout_drl.R' 'lazyeval.R' 'make.R' 'minimum.spanning.tree.R' 'motifs.R' 'nexus.R' 'operators.R' 'other.R' 'package.R' 'palette.R' 'par.R' 'paths.R' 'plot.R' 'plot.common.R' 'plot.shapes.R' 'pp.R' 'print.R' 'printr.R' 'random_walk.R' 'rewire.R' 'scan.R' 'scg.R' 'sgm.R' 'similarity.R' 'simple.R' 'sir.R' 'socnet.R' 'sparsedf.R' 'structural.properties.R' 'structure.info.R' 'test.R' 'tkplot.R' 'topology.R' 'triangles.R' 'utils.R' 'uuid.R' 'versions.R' 'weakref.R' 'zzz-deprecate.R' |
| NeedsCompilation | yes |
| Packaged | 2020-03-18 14:51:55 UTC; gaborcsardi |
| Repository | CRAN |
| Date/Publication | 2020-03-19 09:20:03 UTC |
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