Learn R Programming

skater

SNP-based Kinship Analysis Testing and Evaluation: miscellaneous R data analysis utilties.

Installation

Install stable release from CRAN:

install.packages("skater")

Install development version from GitHub:

remotes::install_github("signaturescience/skater", build_vignettes=TRUE)

Usage

The “Basic Usage” vignette steps through the primary functionality of the skater package:

vignette("basic_usage", package = "skater")

Full documentation: https://signaturescience.github.io/skater/.

Copy Link

Version

Install

install.packages('skater')

Monthly Downloads

174

Version

0.1.2

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Stephen Turner

Last Published

January 31st, 2023

Functions in skater (0.1.2)

arrange_ids

Order IDs across two columns
kin2degree

Kinship coefficient to degree
calc_stats

Calculate various statistics from a confusion matrix
ibd2kin

Compute kinship coefficient from IBD segments
confusion_matrix

Calculate various statistics from a confusion matrix
interpolate

Interpolate over segments
read_plink2_king

Read PLINK KING table
read_ibis

Read IBIS coef output file
plot_pedigree

Plot pedigree
skater-package

skater: Utilities for SNP-Based Kinship Analysis
read_fam

Read PLINK-formatted .fam file
read_map

Read genetic map file
calc_accuracy

Calculate Accuracy
ped2kinpair

Pedigree to pairwise kinship
read_akt

Read AKT kin output file
read_ibd

Read IBD segment file
%>%

Pipe operator
kin2cm

Kinship coefficient to cM
dibble

Degree tibble
fam2ped

Fam to pedigree