Luminescence v0.8.6
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Comprehensive Luminescence Dating Data Analysis
A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Functions in Luminescence
Name | Description | |
RLum-class | Class "RLum" | |
BaseDataSet.CosmicDoseRate | Base data set for cosmic dose rate calculation | |
ExampleData.SurfaceExposure | Example OSL surface exposure dating data | |
RLum.Data-class | Class "RLum.Data" | |
Risoe.BINfileData2RLum.Analysis | Convert Risoe.BINfileData object to an RLum.Analysis object | |
ExampleData.XSYG | Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader | |
RLum.Data.Curve-class | Class "RLum.Data.Curve" | |
ExampleData.LxTxOSLData | Example Lx and Tx curve data from an artificial OSL measurement | |
ExampleData.LxTxData | Example Lx/Tx data from CW-OSL SAR measurement | |
analyse_IRSAR.RF | Analyse IRSAR RF measurements | |
calc_IEU | Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution | |
Second2Gray | Converting equivalent dose values from seconds (s) to gray (Gy) | |
ExampleData.RLum.Analysis | Example data as RLum.Analysis objects | |
ExampleData.RLum.Data.Image | Example data as RLum.Data.Image objects | |
RLum.Analysis-class | Class "RLum.Analysis" | |
analyse_pIRIRSequence | Analyse post-IR IRSL measurement sequences | |
ExampleData.portableOSL | Example portable OSL curve data for the package Luminescence | |
ExampleData.Fading | Example data for feldspar fading measurements | |
analyse_SAR.CWOSL | Analyse SAR CW-OSL measurements | |
analyse_SAR.TL | Analyse SAR TL measurements | |
analyse_portableOSL | Analyse portable CW-OSL measurements | |
calc_CommonDose | Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution | |
ExampleData.FittingLM | Example data for fit_LMCurve() in the package Luminescence | |
calc_CosmicDoseRate | Calculate the cosmic dose rate | |
RLum.Data.Image-class | Class "RLum.Data.Image" | |
calc_MinDose | Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution | |
calc_Kars2008 | Apply the Kars et al. (2008) model (deprecated) | |
RLum.Results-class | Class "RLum.Results" | |
calc_TLLxTxRatio | Calculate the Lx/Tx ratio for a given set of TL curves [beta version] | |
calc_ThermalLifetime | Calculates the Thermal Lifetime using the Arrhenius equation | |
RLum.Data.Spectrum-class | Class "RLum.Data.Spectrum" | |
calc_OSLLxTxRatio | Calculate Lx/Tx ratio for CW-OSL curves | |
convert_RLum2Risoe.BINfileData | Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects | |
convert_Activity2Concentration | Convert Nuclide Activities to Concentrations and Vice Versa | |
analyse_Al2O3C_CrossTalk | Al2O3:C Reader Cross Talk Analysis | |
apply_EfficiencyCorrection | Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects | |
Risoe.BINfileData-class | Class "Risoe.BINfileData" | |
analyse_baSAR | Bayesian models (baSAR) applied on luminescence data | |
as | as() - RLum-object coercion | |
calc_FadingCorr | Apply a fading correction according to Huntley & Lamothe (2001) for a given g-value and a given tc | |
calc_FastRatio | Calculate the Fast Ratio for CW-OSL curves | |
app_RLum | Run Luminescence shiny apps (wrapper) | |
analyse_Al2O3C_ITC | Al2O3 Irradiation Time Correction Analysis | |
convert_BIN2CSV | Export Risoe BIN-file(s) to CSV-files | |
GitHub-API | GitHub API | |
Luminescence-package | Comprehensive Luminescence Dating Data Analysis | |
PSL2Risoe.BINfileData | Convert portable OSL data to an Risoe.BINfileData object | |
calc_SourceDoseRate | Calculation of the source dose rate via the date of measurement | |
calc_AverageDose | Calculate the Average Dose and the dose rate dispersion | |
calc_CentralDose | Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution | |
calc_Statistics | Function to calculate statistic measures | |
calc_Lamothe2003 | Apply fading correction after Lamothe et al., 2003 | |
bin_RLum.Data | Channel binning - method dispatchter | |
analyse_Al2O3C_Measurement | Al2O3:C Passive Dosimeter Measurement Analysis | |
analyse_FadingMeasurement | Analyse fading measurements and returns the fading rate per decade (g-value) | |
calc_MaxDose | Apply the maximum age model to a given De distribution | |
calc_AliquotSize | Estimate the amount of grains on an aliquot | |
calc_HomogeneityTest | Apply a simple homogeneity test after Galbraith (2003) | |
calc_Huntley2006 | Apply the Huntley (2006) model | |
calc_WodaFuchs2008 | Obtain the equivalent dose using the approach by Woda and Fuchs 2008 | |
fit_SurfaceExposure | Nonlinear Least Squares Fit for OSL surface exposure data | |
convert_XSYG2CSV | Export XSYG-file(s) to CSV-files | |
get_Layout | Collection of layout definitions | |
fit_CWCurve | Nonlinear Least Squares Fit for CW-OSL curves [beta version] | |
calc_gSGC | Calculate De value based on the gSGC by Li et al., 2015 | |
install_DevelopmentVersion | Attempts to install the development version of the 'Luminescence' package | |
length_RLum | General accessor function for RLum S4 class objects | |
extdata | Collection of External Data | |
plot_KDE | Plot kernel density estimate with statistics | |
extract_IrradiationTimes | Extract Irradiation Times from an XSYG-file | |
merge_RLum.Analysis | Merge function for RLum.Analysis S4 class objects | |
apply_CosmicRayRemoval | Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object | |
merge_RLum.Data.Curve | Merge function for RLum.Data.Curve S4 class objects | |
plot_ViolinPlot | Create a violin plot | |
get_Risoe.BINfileData | General accessor function for RLum S4 class objects | |
fit_LMCurve | Nonlinear Least Squares Fit for LM-OSL curves | |
plot_NRt | Visualise natural/regenerated signal ratios | |
plot_DetPlot | Create De(t) plot | |
convert_Daybreak2CSV | Export measurement data produced by a Daybreak luminescence reader to CSV-files | |
convert_PSL2CSV | Export PSL-file(s) to CSV-files | |
get_Quote | Function to return essential quotes | |
get_rightAnswer | Function to get the right answer | |
get_RLum | General accessor function for RLum S4 class objects | |
read_BIN2R | Import Risoe BIN-file into R | |
plot_AbanicoPlot | Function to create an Abanico Plot. | |
calc_FiniteMixture | Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution | |
plot_FilterCombinations | Plot filter combinations along with the (optional) net transmission window | |
replicate_RLum | General replication function for RLum S4 class objects | |
plot_DRTResults | Visualise dose recovery test results | |
calc_FuchsLang2001 | Apply the model after Fuchs & Lang (2001) to a given De distribution. | |
plot_RLum.Data.Image | Plot function for an RLum.Data.Image S4 class object | |
sTeve | sTeve - sophisticated tool for efficient data validation and evaluation | |
plot_RLum.Data.Spectrum | Plot function for an RLum.Data.Spectrum S4 class object | |
set_RLum | General set function for RLum S4 class objects | |
merge_RLum | General merge function for RLum S4 class objects | |
merge_RLum.Results | Merge function for RLum.Results S4-class objects | |
model_LuminescenceSignals | Model Luminescence Signals (wrapper) | |
report_RLum | Create a HTML report for (RLum) objects | |
names_RLum | S4-names function for RLum S4 class objects | |
plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose) | |
plot_Histogram | Plot a histogram with separate error plot | |
plot_RadialPlot | Function to create a Radial Plot | |
plot_Risoe.BINfileData | Plot single luminescence curves from a BIN file object | |
plot_RLum.Analysis | Plot function for an RLum.Analysis S4 class object | |
plot_RLum.Data.Curve | Plot function for an RLum.Data.Curve S4 class object | |
read_Daybreak2R | Import measurement data produced by a Daybreak TL/OSL reader into R | |
read_SPE2R | Import Princeton Intruments (TM) SPE-file into R | |
merge_Risoe.BINfileData | Merge Risoe.BINfileData objects or Risoe BIN-files | |
methods_RLum | methods_RLum | |
read_XSYG2R | Import XSYG files to R | |
tune_Data | Tune data for experimental purpose | |
use_DRAC | Use DRAC to calculate dose rate data | |
write_R2BIN | Export Risoe.BINfileData into Risoe BIN-file | |
verify_SingleGrainData | Verify single grain data sets and check for invalid grains, i.e. zero-light level grains | |
plot_RLum | General plot function for RLum S4 class objects | |
read_PSL2R | Import PSL files to R | |
plot_RLum.Results | Plot function for an RLum.Results S4 class object | |
set_Risoe.BINfileData | General accessor function for RLum S4 class objects | |
structure_RLum | General structure function for RLum S4 class objects | |
smooth_RLum | Smoothing of data | |
template_DRAC | Create a DRAC input data template (v1.2) | |
write_RLum2CSV | Export RLum-objects to CSV | |
ExampleData.Al2O3C | Example Al2O3:C Measurement Data | |
ExampleData.CW_OSL_Curve | Example CW-OSL curve data for the package Luminescence | |
ExampleData.BINfileData | Example data from a SAR OSL and SAR TL measurement for the package Luminescence | |
ExampleData.DeValues | Example De data sets for the package Luminescence | |
Analyse_SAR.OSLdata | Analyse SAR CW-OSL measurements. | |
CW2pLMi | Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions | |
CW2pPMi | Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions | |
CW2pHMi | Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions | |
CW2pLM | Transform a CW-OSL curve into a pLM-OSL curve | |
No Results! |
Vignettes of Luminescence
Name | ||
HowTo_analyse_Al2O3.Rmd | ||
HowTo_analyse_Al2O3.html.asis | ||
HowTo_analyse_pIRIRMeasurements.Rmd | ||
HowTo_analyse_pIRIRMeasurements.html.asis | ||
S4classObjects.pdf.asis | ||
No Results! |
Last month downloads
Details
Type | Package |
Date | 2018-10-05 |
Contact | Package Developers |
License | GPL-3 |
BugReports | https://github.com/R-Lum/Luminescence/issues |
LinkingTo | Rcpp (>= 0.12.15), RcppArmadillo (>= 0.8.300.1.0) |
VignetteBuilder | R.rsp |
URL | https://CRAN.R-project.org/package=Luminescence |
Encoding | UTF-8 |
Collate | 'Analyse_SAR.OSLdata.R' 'CW2pHMi.R' 'CW2pLM.R' 'CW2pLMi.R' 'CW2pPMi.R' 'Luminescence-package.R' 'PSL2Risoe.BINfileData.R' 'RcppExports.R' 'replicate_RLum.R' 'RLum-class.R' 'smooth_RLum.R' 'names_RLum.R' 'structure_RLum.R' 'length_RLum.R' 'set_RLum.R' 'get_RLum.R' 'RLum.Analysis-class.R' 'RLum.Data-class.R' 'bin_RLum.Data.R' 'RLum.Data.Curve-class.R' 'RLum.Data.Image-class.R' 'RLum.Data.Spectrum-class.R' 'RLum.Results-class.R' 'Risoe.BINfileData2RLum.Analysis.R' 'Risoe.BINfileData2RLum.Data.Curve.R' 'set_Risoe.BINfileData.R' 'get_Risoe.BINfileData.R' 'RisoeBINfileData-class.R' 'Second2Gray.R' 'addins_RLum.R' 'analyse_Al2O3C_CrossTalk.R' 'analyse_Al2O3C_ITC.R' 'analyse_Al2O3C_Measurement.R' 'analyse_FadingMeasurement.R' 'analyse_IRSAR.RF.R' 'analyse_SAR.CWOSL.R' 'analyse_SAR.TL.R' 'analyse_baSAR.R' 'analyse_pIRIRSequence.R' 'analyse_portableOSL.R' 'app_RLum.R' 'apply_CosmicRayRemoval.R' 'apply_EfficiencyCorrection.R' 'calc_AliquotSize.R' 'calc_AverageDose.R' 'calc_CentralDose.R' 'calc_CommonDose.R' 'calc_CosmicDoseRate.R' 'calc_FadingCorr.R' 'calc_FastRatio.R' 'calc_FiniteMixture.R' 'calc_FuchsLang2001.R' 'calc_HomogeneityTest.R' 'calc_Huntley2006.R' 'calc_IEU.R' 'calc_Kars2008.R' 'calc_Lamothe2003.R' 'calc_MaxDose.R' 'calc_MinDose.R' 'calc_OSLLxTxRatio.R' 'calc_SourceDoseRate.R' 'calc_Statistics.R' 'calc_TLLxTxRatio.R' 'calc_ThermalLifetime.R' 'calc_WodaFuchs2008.R' 'calc_gSGC.R' 'convert_Activity2Concentration.R' 'convert_BIN2CSV.R' 'convert_Daybreak2CSV.R' 'convert_PSL2CSV.R' 'convert_RLum2Risoe.BINfileData.R' 'convert_XSYG2CSV.R' 'extract_IrradiationTimes.R' 'fit_CWCurve.R' 'fit_LMCurve.R' 'fit_SurfaceExposure.R' 'get_Layout.R' 'get_Quote.R' 'get_rightAnswer.R' 'github.R' 'install_DevelopmentVersion.R' 'internal_as.latex.table.R' 'internals_RLum.R' 'merge_RLum.Analysis.R' 'merge_RLum.Data.Curve.R' 'merge_RLum.R' 'merge_RLum.Results.R' 'merge_Risoe.BINfileData.R' 'methods_DRAC.R' 'methods_RLum.R' 'model_LuminescenceSignals.R' 'plot_AbanicoPlot.R' 'plot_DRTResults.R' 'plot_DetPlot.R' 'plot_FilterCombinations.R' 'plot_GrowthCurve.R' 'plot_Histogram.R' 'plot_KDE.R' 'plot_NRt.R' 'plot_RLum.Analysis.R' 'plot_RLum.Data.Curve.R' 'plot_RLum.Data.Image.R' 'plot_RLum.Data.Spectrum.R' 'plot_RLum.R' 'plot_RLum.Results.R' 'plot_RadialPlot.R' 'plot_Risoe.BINfileData.R' 'plot_ViolinPlot.R' 'read_BIN2R.R' 'read_Daybreak2R.R' 'read_PSL2R.R' 'read_SPE2R.R' 'read_XSYG2R.R' 'report_RLum.R' 'template_DRAC.R' 'tune_Data.R' 'use_DRAC.R' 'utils_DRAC.R' 'verify_SingleGrainData.R' 'write_R2BIN.R' 'write_RLum2CSV.R' 'zzz.R' |
RoxygenNote | 6.1.0 |
NeedsCompilation | yes |
Packaged | 2018-10-04 07:37:23 UTC; kreutzer |
Repository | CRAN |
Date/Publication | 2018-10-05 10:02:17 UTC |
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