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Luminescence (version 0.8.6)

Comprehensive Luminescence Dating Data Analysis

Description

A collection of various R functions for the purpose of Luminescence dating data analysis. This includes, amongst others, data import, export, application of age models, curve deconvolution, sequence analysis and plotting of equivalent dose distributions.

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Version

Install

install.packages('Luminescence')

Monthly Downloads

1,277

Version

0.8.6

License

GPL-3

Maintainer

Sebastian Kreutzer

Last Published

October 5th, 2018

Functions in Luminescence (0.8.6)

BaseDataSet.CosmicDoseRate

Base data set for cosmic dose rate calculation

ExampleData.SurfaceExposure

Example OSL surface exposure dating data

RLum.Data-class

Class "RLum.Data"

Risoe.BINfileData2RLum.Analysis

Convert Risoe.BINfileData object to an RLum.Analysis object

ExampleData.XSYG

Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader

RLum.Data.Curve-class

Class "RLum.Data.Curve"

ExampleData.LxTxOSLData

Example Lx and Tx curve data from an artificial OSL measurement

ExampleData.LxTxData

Example Lx/Tx data from CW-OSL SAR measurement

analyse_IRSAR.RF

Analyse IRSAR RF measurements

Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution

Converting equivalent dose values from seconds (s) to gray (Gy)

ExampleData.RLum.Analysis

Example data as '>RLum.Analysis objects

ExampleData.RLum.Data.Image

Example data as '>RLum.Data.Image objects

RLum.Analysis-class

Class "RLum.Analysis"

analyse_pIRIRSequence

Analyse post-IR IRSL measurement sequences

ExampleData.portableOSL

Example portable OSL curve data for the package Luminescence

ExampleData.Fading

Example data for feldspar fading measurements

analyse_SAR.CWOSL

Analyse SAR CW-OSL measurements

Analyse SAR TL measurements

analyse_portableOSL

Analyse portable CW-OSL measurements

calc_CommonDose

Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution

ExampleData.FittingLM

Example data for fit_LMCurve() in the package Luminescence

calc_CosmicDoseRate

Calculate the cosmic dose rate

RLum.Data.Image-class

Class "RLum.Data.Image"

Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution

Apply the Kars et al. (2008) model (deprecated)

RLum.Results-class

Class "RLum.Results"

calc_TLLxTxRatio

Calculate the Lx/Tx ratio for a given set of TL curves [beta version]

calc_ThermalLifetime

Calculates the Thermal Lifetime using the Arrhenius equation

RLum.Data.Spectrum-class

Class "RLum.Data.Spectrum"

calc_OSLLxTxRatio

Calculate Lx/Tx ratio for CW-OSL curves

convert_RLum2Risoe.BINfileData

Converts RLum.Analysis-objects and RLum.Data.Curve-objects to RLum2Risoe.BINfileData-objects

convert_Activity2Concentration

Convert Nuclide Activities to Concentrations and Vice Versa

analyse_Al2O3C_CrossTalk

Al2O3:C Reader Cross Talk Analysis

apply_EfficiencyCorrection

Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects

Risoe.BINfileData-class

Class "Risoe.BINfileData"

Bayesian models (baSAR) applied on luminescence data

as() - RLum-object coercion

calc_FadingCorr

Apply a fading correction according to Huntley & Lamothe (2001) for a given g-value and a given tc

Calculate the Fast Ratio for CW-OSL curves

Run Luminescence shiny apps (wrapper)

analyse_Al2O3C_ITC

Al2O3 Irradiation Time Correction Analysis

convert_BIN2CSV

Export Risoe BIN-file(s) to CSV-files

Luminescence-package

Comprehensive Luminescence Dating Data Analysis

PSL2Risoe.BINfileData

Convert portable OSL data to an Risoe.BINfileData object

calc_SourceDoseRate

Calculation of the source dose rate via the date of measurement

calc_AverageDose

Calculate the Average Dose and the dose rate dispersion

calc_CentralDose

Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution

calc_Statistics

Function to calculate statistic measures

calc_Lamothe2003

Apply fading correction after Lamothe et al., 2003

Channel binning - method dispatchter

analyse_Al2O3C_Measurement

Al2O3:C Passive Dosimeter Measurement Analysis

analyse_FadingMeasurement

Analyse fading measurements and returns the fading rate per decade (g-value)

Apply the maximum age model to a given De distribution

calc_AliquotSize

Estimate the amount of grains on an aliquot

calc_HomogeneityTest

Apply a simple homogeneity test after Galbraith (2003)

calc_Huntley2006

Apply the Huntley (2006) model

calc_WodaFuchs2008

Obtain the equivalent dose using the approach by Woda and Fuchs 2008

fit_SurfaceExposure

Nonlinear Least Squares Fit for OSL surface exposure data

convert_XSYG2CSV

Export XSYG-file(s) to CSV-files

Collection of layout definitions

Nonlinear Least Squares Fit for CW-OSL curves [beta version]

Calculate De value based on the gSGC by Li et al., 2015

install_DevelopmentVersion

Attempts to install the development version of the 'Luminescence' package

General accessor function for RLum S4 class objects

Collection of External Data

Plot kernel density estimate with statistics

extract_IrradiationTimes

Extract Irradiation Times from an XSYG-file

merge_RLum.Analysis

Merge function for RLum.Analysis S4 class objects

apply_CosmicRayRemoval

Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object

merge_RLum.Data.Curve

Merge function for RLum.Data.Curve S4 class objects

plot_ViolinPlot

Create a violin plot

get_Risoe.BINfileData

General accessor function for RLum S4 class objects

Nonlinear Least Squares Fit for LM-OSL curves

Visualise natural/regenerated signal ratios

Create De(t) plot

convert_Daybreak2CSV

Export measurement data produced by a Daybreak luminescence reader to CSV-files

convert_PSL2CSV

Export PSL-file(s) to CSV-files

Function to return essential quotes

get_rightAnswer

Function to get the right answer

General accessor function for RLum S4 class objects

Import Risoe BIN-file into R

plot_AbanicoPlot

Function to create an Abanico Plot.

calc_FiniteMixture

Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution

plot_FilterCombinations

Plot filter combinations along with the (optional) net transmission window

General replication function for RLum S4 class objects

plot_DRTResults

Visualise dose recovery test results

calc_FuchsLang2001

Apply the model after Fuchs & Lang (2001) to a given De distribution.

plot_RLum.Data.Image

Plot function for an RLum.Data.Image S4 class object

sTeve - sophisticated tool for efficient data validation and evaluation

plot_RLum.Data.Spectrum

Plot function for an RLum.Data.Spectrum S4 class object

General set function for RLum S4 class objects

General merge function for RLum S4 class objects

merge_RLum.Results

Merge function for RLum.Results S4-class objects

model_LuminescenceSignals

Model Luminescence Signals (wrapper)

Create a HTML report for (RLum) objects

S4-names function for RLum S4 class objects

plot_GrowthCurve

Fit and plot a growth curve for luminescence data (Lx/Tx against dose)

Plot a histogram with separate error plot

plot_RadialPlot

Function to create a Radial Plot

plot_Risoe.BINfileData

Plot single luminescence curves from a BIN file object

plot_RLum.Analysis

Plot function for an RLum.Analysis S4 class object

plot_RLum.Data.Curve

Plot function for an RLum.Data.Curve S4 class object

read_Daybreak2R

Import measurement data produced by a Daybreak TL/OSL reader into R

Import Princeton Intruments (TM) SPE-file into R

merge_Risoe.BINfileData

Merge Risoe.BINfileData objects or Risoe BIN-files

Import XSYG files to R

Tune data for experimental purpose

Use DRAC to calculate dose rate data

Export Risoe.BINfileData into Risoe BIN-file

verify_SingleGrainData

Verify single grain data sets and check for invalid grains, i.e. zero-light level grains

General plot function for RLum S4 class objects

Import PSL files to R

plot_RLum.Results

Plot function for an RLum.Results S4 class object

set_Risoe.BINfileData

General accessor function for RLum S4 class objects

General structure function for RLum S4 class objects

Smoothing of data

Create a DRAC input data template (v1.2)

Export RLum-objects to CSV

ExampleData.Al2O3C

Example Al2O3:C Measurement Data

ExampleData.CW_OSL_Curve

Example CW-OSL curve data for the package Luminescence

ExampleData.BINfileData

Example data from a SAR OSL and SAR TL measurement for the package Luminescence

ExampleData.DeValues

Example De data sets for the package Luminescence

Analyse_SAR.OSLdata

Analyse SAR CW-OSL measurements.

Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions

Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions

Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions

Transform a CW-OSL curve into a pLM-OSL curve