Learn R Programming

rsbml (version 2.30.0)

R support for SBML, using libsbml

Description

Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.

Copy Link

Version

Monthly Downloads

6

Version

2.30.0

License

Artistic-2.0

Maintainer

Michael Lawrence

Last Published

February 15th, 2017

Functions in rsbml (2.30.0)

AssignmentRule-class

SBML type "AssignmentRule"
AlgebraicRule-class

SBML type "AlgebraicRule"
CompartmentType-class

SBML Type "CompartmentType"
ModifierSpeciesReference-class

SBML type "ModifierSpeciesReference"
RateRule-class

SBML type "RateRule"
ModelCreator-class

SBML Type "ModelCreator"
ReactionGlyph-class

SBML type "ReactionGlyph"
Rule-class

SBML type "Rule"
describe

Describing objects
CubicBezier-class

SBML type "CubicBezier"
Event-class

SBML type "Event"
SBMLProblems-class

SBMLProblems
Point-class

SBML type "Point"
KineticLaw-class

SBML type "KineticLaw"
SOSResult-class

SOSResult
InitialAssignment-class

SBML Type "InitialAssignment"
GraphicalObject-class

SBML type "GraphicalObject"
Layout-class

SBML type "Layout"
SpeciesReference-class

SBML type "SpeciesReference"
Parameter-class

SBML type "Parameter"
Unit-class

SBML type "Unit"
Reaction-class

SBML type "Reaction"
SpeciesConcentrationRule-class

SBML type "SpeciesConcentrationRule"
SOSDesign-class

SOSDesign
EventAssignment-class

SBML type "EventAssignment"
Species-class

SBML type "Species"
CompartmentGlyph-class

SBML type "CompartmentGlyph"
Curve-class

SBML type "Curve"
ParameterRule-class

SBML type "ParameterRule"
FunctionDefinition-class

SBML type "FunctionDefinition"
TextGlyph-class

SBML type "TextGlyph"
UnitDefinition-class

SBML type "UnitDefinition"
CVTerm-class

SBML Type "CVTerm"
SOSExperiment-class

SOS Experiment
ModelHistory-class

SBML Type "ModelHistory"
SBMLDocument-class

"SBMLDocument" from libsbml
Delay-class

SBML Type "Delay"
SBase-class

SBML type "SBase"
SpeciesGlyph-class

SBML type "SpeciesGlyph"
Trigger-class

SBML Type "Trigger"
SBMLProblem-class

SBMLProblem
Compartment-class

SBML type "Compartment"
SBML-class

SBML type "SBML"
SimpleSpeciesReference-class

SBML type "SimpleSpeciesReference"
math

MathML Utilities
SBML import

Read in an SBML file (start here)
LineSegment-class

SBML type "LineSegment"
Experiment-class

Experiment
Dimensions-class

SBML type "Dimensions"
Model-class

SBML type "Model"
SOSProtocol-class

SOSProtocol
SpeciesReferenceGlyph-class

SBML type "SpeciesReferenceGlyph"
StoichiometryMath-class

SBML type "StoichiometryMath"
BoundingBox-class

SBML type "BoundingBox"
CompartmentVolumeRule-class

SBML type "CompartmentVolumeRule"
Constraint-class

SBML Type "Constraint"
SOSSubject-class

SOSSubject
SpeciesType-class

SBML Type "SpeciesType"