Learn R Programming

Mulcom (version 1.22.0)

Calculates Mulcom test

Description

Identification of differentially expressed genes and false discovery rate (FDR) calculation by Multiple Comparison test

Copy Link

Version

Version

1.22.0

License

GPL-2

Maintainer

Claudio Isella

Last Published

February 15th, 2017

Functions in Mulcom (1.22.0)

mulScores

MulCom Score Calculation
mulDELTA

MulCom Delta
samAffySymbols

significant gene list with SAM in Affymetrix
mulIndex

Mulcom Index for Monte Carlo Simlation
AffyIlmn

cross mapping table
mulOptPlot

MulCom optimization Plot
mulcomGeneListIlmn

significant gene list with limma in Illumina
samIlmnSymbols

significant gene list with SAM in Illumina
mulInt

generates a consensus matrix from list of genes
MULCOM-class

Class MulCom
mulOpt

MulCom optimization
mulParOpt

MulCom Parameters Optimization
Ilmn

Ilmn Dataset
mulSSE

MulCom Sum of Square Error
MULCOM_P-class

Class MulCom Permutation
harmonicMean

MulCom Harmonic Mean
mulCAND

Identify the Mulcom candidate feature selection
samOptPars

sam Parameter Optimization
mulDiff

MulCom Test Differential analysis
mulPerm

MulCom Permutation
limmaIlmnSymbols

significant gene list with limma in Illumina
mulCalc

MulCom Calculation
mulMSE

MulCom Mean Square Error
mulPermC

MulCom Permutation
mulFSG

MulCom False Significant Genes
Affy

Affy Dataset
Illumina

Illumina Dataset
limmaAffySymbols

significant gene list with limma in Affymetrix
mulOptPars

MulCom Parameter Optimization