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spdep (version 0.6-9)

Spatial Dependence: Weighting Schemes, Statistics and Models

Description

A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.

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Version

Install

install.packages('spdep')

Monthly Downloads

41,428

Version

0.6-9

License

GPL (>= 2)

Maintainer

Roger Bivand

Last Published

January 9th, 2017

Functions in spdep (0.6-9)

autocov_dist

Distance-weighted autocovariate
aple.mc

Approximate profile-likelihood estimator (APLE) permutation test
aple.plot

Approximate profile-likelihood estimator (APLE) scatterplot
aple

Approximate profile-likelihood estimator (APLE)
auckland

Marshall's infant mortality in Auckland dataset
as_dgRMatrix_listw

Interface between Matrix class objects and weights lists
airdist

Measure distance from plot
anova.sarlm

Comparison of simultaneous autoregressive models
boston

Corrected Boston Housing Data
columbus

Columbus OH spatial analysis data set
Graph Components

Depth First Search on Neighbor Lists
bhicv

Data set with 4 life condition indices of Belo Horizonte region
baltimore

House sales prices, Baltimore, MD 1978
card

Cardinalities for neighbours lists
cell2nb

Generate neighbours list for grid cells
oldcol

Columbus OH spatial analysis data set - old numbering
choynowski

Choynowski probability map values
GMerrorsar

Spatial simultaneous autoregressive error model estimation by GMM
globalG.test

Global G test for spatial autocorrelation
lag.listw

Spatial lag of a numeric vector
lagmess

Matrix exponential spatial lag model
geary.test

Geary's C test for spatial autocorrelation
dnearneigh

Neighbourhood contiguity by distance
diffnb

Differences between neighbours lists
joincount.multi

BB, BW and Jtot join count statistic for k-coloured factors
getisord

Getis-Ord remote sensing example data
joincount.test

BB join count statistic for k-coloured factors
lee

Compute Lee's statistic
lagsarlm

Spatial simultaneous autoregressive lag model estimation
localG

G and Gstar local spatial statistics
localmoran.exact

Exact local Moran's Ii tests
EBlocal

Local Empirical Bayes estimator
moran.test

Moran's I test for spatial autocorrelation
edit.nb

Interactive editing of neighbours lists
mstree

Find the minimal spanning tree
hopkins

Hopkins burnt savanna herb remains
lee.test

Lee's L test for spatial autocorrelation
house

Lucas county OH housing
lee.mc

Permutation test for Lee's L statistic
plot.nb

Plot a neighbours list
plot.skater

Plot the object of skater class
prunecost

Compute cost of prune each edge
probmap

Probability mapping for rates
skater

Spatial 'K'luster Analysis by Tree Edge Removal
similar.listw

Create symmetric similar weights lists
localmoran.sad

Saddlepoint approximation of local Moran's Ii tests
LR.sarlm

Likelihood ratio test
nblag

Higher order neighbours lists
nb2mat

Spatial weights matrices for neighbours lists
nb2WB

Output spatial weights for WinBUGS
aggregate.nb

Aggregate a spatial neighbours object
nb.set.operations

Set operations on neighborhood objects
afcon

Spatial patterns of conflict in Africa 1966-78
droplinks

Drop links in a neighbours list
do_ldet

Spatial regression model Jacobian computations
errorsarlm

Spatial simultaneous autoregressive error model estimation
geary.mc

Permutation test for Geary's C statistic
knearneigh

K nearest neighbours for spatial weights
lm.morantest

Moran's I test for residual spatial autocorrelation
lm.morantest.sad

Saddlepoint approximation of global Moran's I test
MCMCsamp

MCMC sample from fitted spatial regression
mat2listw

Convert a square spatial weights matrix to a weights list object
nb2lines

Use arc-type shapefiles for import and export of weights
nb2listw

Spatial weights for neighbours lists
nc.sids

North Carolina SIDS data
summary.nb

Print and summary function for neighbours and weights lists
bptest.sarlm

Breusch-Pagan test for spatial models
summary.sarlm

summary method for class sarlm
EBest

Global Empirical Bayes estimator
EBImoran.mc

Permutation test for empirical Bayes index
huddersfield

Prevalence of respiratory symptoms
lextrB

Find extreme eigenvalues of binary symmetric spatial weights
impacts

Impacts in spatial lag models
moran.mc

Permutation test for Moran's I statistic
listw2sn

Spatial neighbour sparse representation
NY_data

New York leukemia data
spweights.constants

Provides constants for spatial weights matrices
spdep

Return package version number
Rotation

Rotate a set of point by a certain angle
sacsarlm

Spatial simultaneous autoregressive SAC model estimation
write.nb.gal

Write a neighbours list as a GAL lattice file
elect80

1980 Presidential election results
eire

Eire data sets
graphneigh

Graph based spatial weights
gstsls

Spatial simultaneous autoregressive SAC model estimation by GMM
include.self

Include self in neighbours list
knn2nb

Neighbours list from knn object
joincount.mc

Permutation test for same colour join count statistics
lm.LMtests

Lagrange Multiplier diagnostics for spatial dependence in linear models
lm.morantest.exact

Exact global Moran's I test
ME

Moran eigenvector GLM filtering
moran

Compute Moran's I
nbcosts

Compute cost of edges
poly2nb

Construct neighbours list from polygon list
set.mcOption

Options for parallel support
nbdists

Spatial link distance measures
set.spChkOption

Control checking of spatial object IDs
ssw

Compute the sum of dissimilarity
stsls

Generalized spatial two stage least squares
is.symmetric.nb

Test a neighbours list for symmetry
prunemst

Prune a Minimun Spanning Tree
read.gal

Read a GAL lattice file into a neighbours list
subset.listw

Subset a spatial weights list
sp.mantel.mc

Mantel-Hubert spatial general cross product statistic
sp.correlogram

Spatial correlogram
subset.nb

Subset a neighbours list
tolerance.nb

Function to construct edges based on a tolerance angle and a maximum distance
tri2nb

Neighbours list from tri object
predict.sarlm

Prediction for spatial simultaneous autoregressive linear model objects
trW

Spatial weights matrix powers traces
moran.plot

Moran scatterplot
nb2blocknb

Block up neighbour list for location-less observations
nb2INLA

Output spatial neighbours for INLA
plot.mst

Plot the Minimum Spanning Tree
p.adjustSP

Adjust local association measures' p-values
SpatialFiltering

Semi-parametric spatial filtering
residuals.sarlm

Access functions for spatial simultaneous autoregressive linear model objects
read.gwt2nb

Read and write spatial neighbour files
spautolm

Spatial conditional and simultaneous autoregression model estimation
used.cars

US 1960 used car prices
wheat

Mercer and Hall wheat yield data